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Bioc-devel December 2017

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Aaron Lun

Last active: Dec 15, 2017
8 msgs
Aaron Lun splitting simpleSingleCell into self-contained vignettes Dec 11, 2017 Aaron Lun splitting simpleSingleCell into self-contained vignettes Dec 11, 2017 Aaron Lun splitting simpleSingleCell into self-contained vignettes Dec 12, 2017 Aaron Lun splitting simpleSingleCell into self-contained vignettes Dec 12, 2017 Aaron Lun splitting simpleSingleCell into self-contained vignettes Dec 12, 2017 Aaron Lun splitting simpleSingleCell into self-contained vignettes Dec 13, 2017 Aaron Lun workflow page reorganization Dec 15, 2017 Aaron Lun workflow page reorganization Dec 15, 2017

Andrzej Oleś

Last active: Dec 15, 2017
5 msgs
Andrzej Oleś splitting simpleSingleCell into self-contained vignettes Dec 12, 2017 Andrzej Oleś splitting simpleSingleCell into self-contained vignettes Dec 12, 2017 Andrzej Oleś workflow page reorganization Dec 15, 2017 Andrzej Oleś workflow page reorganization Dec 15, 2017 Andrzej Oleś workflow page reorganization Dec 15, 2017

Bastian Seelbinder

Last active: Dec 19, 2017
1 msg
Bastian Seelbinder New Package Submission with external tool dependency Dec 19, 2017

Christopher John

Last active: Dec 14, 2017
2 msgs
Christopher John Version update question and an error? Dec 12, 2017 Christopher John Updating bioconductor after computer transfer - problem Dec 14, 2017

Dwivedi, Bhakti

Last active: Dec 11, 2017
1 msg
Dwivedi, Bhakti parallel processing in R? Dec 11, 2017

Eric ...

Last active: Dec 7, 2017
1 msg
Eric ... Errors and warnings while submitting package Dec 7, 2017

Federico Calboli

Last active: Dec 6, 2017
1 msg
Federico Calboli no OSX repo for R 3.4.3 Dec 6, 2017

Felix Ernst

Last active: Dec 12, 2017
1 msg
Felix Ernst SummarizedExperiment: duplication of metadata, when modifying colData Dec 12, 2017

George Wu

Last active: Dec 12, 2017
1 msg
George Wu Question about Access to Bioconductor through Git Dec 12, 2017

Gmail

Last active: Dec 23, 2017
4 msgs
Gmail Incrimental writing to HDF5 / DelayedMatrix Dec 21, 2017 Gmail Incrimental writing to HDF5 / DelayedMatrix Dec 21, 2017 Gmail Incrimental writing to HDF5 / DelayedMatrix Dec 21, 2017 Gmail Long-form documentation for DelayedArray? Dec 23, 2017

Habil Zare

Last active: Dec 5, 2017
1 msg
Habil Zare Pigengene problems reported due to partykit::as.party Dec 5, 2017

Henrik Bengtsson

Last active: Dec 1, 2017
1 msg
Henrik Bengtsson BiocFileCache for developers Dec 1, 2017

Hervé Pagès

Last active: Dec 20, 2017
5 msgs
Hervé Pagès a possible bug in development version of GenomicAlignments Dec 3, 2017 Hervé Pagès SummarizedExperiment: duplication of metadata, when modifying colData Dec 14, 2017 Hervé Pagès Rsamtools does not export "path" Dec 19, 2017 Hervé Pagès fixing 'path' not being exported by 'Rsamtools' Dec 19, 2017 Hervé Pagès fixing 'path' not being exported by 'Rsamtools' Dec 20, 2017

Hoffman, Gabriel

Last active: Dec 15, 2017
2 msgs
Hoffman, Gabriel git push to Bioconductor failing Dec 15, 2017 Hoffman, Gabriel git push to Bioconductor failing Dec 15, 2017

James W. MacDonald

Last active: Dec 7, 2017
1 msg
James W. MacDonald 'IlluminaHumanMethylation450k.db' package installation Dec 7, 2017

Janssen-10, R.R.E.

Last active: Dec 18, 2017
1 msg
Janssen-10, R.R.E. Collision with generic function "seed" in DelayedArray. Dec 18, 2017

Jiaxing Lin, Ph.D.

Last active: Dec 18, 2017
1 msg
Jiaxing Lin, Ph.D. pthread error with windows platform on tokay2 Dec 18, 2017

Karim Mezhoud

Last active: Dec 11, 2017
1 msg
Karim Mezhoud canceR problems reported in the Multiple platform build/check report for BioC 3.6 Dec 11, 2017

Laurent Gatto

Last active: Dec 15, 2017
1 msg
Laurent Gatto workflow page reorganization Dec 15, 2017

Leonardo Collado Torres

Last active: Dec 5, 2017
1 msg
Leonardo Collado Torres Data package timeouts Dec 5, 2017

Ludwig Geistlinger

Last active: Dec 30, 2017
4 msgs
Ludwig Geistlinger GSE62944, empty EH164 and EH165 Dec 14, 2017 Ludwig Geistlinger Updated Deprecated Package List for Bioc 3.7 Dec 15, 2017 Ludwig Geistlinger GSE62944, empty EH164 and EH165 Dec 15, 2017 Ludwig Geistlinger BiocParallel: fine-grained progress bar Dec 30, 2017

Maarten van Iterson

Last active: Dec 13, 2017
3 msgs
Maarten van Iterson unknown build error novel bioc. package Dec 13, 2017 Maarten van Iterson unknown build error novel bioc. package Dec 13, 2017 Maarten van Iterson EXTERNAL: Re: unknown build error novel bioc. package Dec 13, 2017

Marcel Ramos

Last active: Dec 13, 2017
3 msgs
Marcel Ramos EXTERNAL: unknown build error novel bioc. package Dec 13, 2017 Marcel Ramos unknown build error novel bioc. package Dec 13, 2017 Marcel Ramos EXTERNAL: Re: unknown build error novel bioc. package Dec 13, 2017

Markus List

Last active: Dec 20, 2017
1 msg
Markus List Update in BioMart/ENSEMBL alters coMET Dec 20, 2017

Martin Morgan

Last active: Dec 31, 2017
6 msgs
Martin Morgan BiocFileCache for developers Dec 1, 2017 Martin Morgan Pigengene problems reported due to partykit::as.party Dec 6, 2017 Martin Morgan 'IlluminaHumanMethylation450k.db' package installation Dec 7, 2017 Martin Morgan parallel processing in R? Dec 11, 2017 Martin Morgan Incrimental writing to HDF5 / DelayedMatrix Dec 21, 2017 Martin Morgan BiocParallel: fine-grained progress bar Dec 31, 2017

Martin, Tiphaine

Last active: Dec 19, 2017
1 msg
Martin, Tiphaine Update in BioMart/ENSEMBL alters coMET Dec 19, 2017

Maryam Hosseini Asanjan

Last active: Dec 7, 2017
1 msg
Maryam Hosseini Asanjan 'IlluminaHumanMethylation450k.db' package installation Dec 7, 2017

Mattia Chiesa

Last active: Dec 12, 2017
2 msgs
Mattia Chiesa DaMiRseq: error while pushing Dec 12, 2017 Mattia Chiesa R: DaMiRseq: error while pushing Dec 12, 2017

Michael Lawrence

Last active: Dec 3, 2017
1 msg
Michael Lawrence cherry picking fixes to release Dec 3, 2017

Michael Love

Last active: Dec 15, 2017
5 msgs
Michael Love BiocFileCache for developers Dec 1, 2017 Michael Love BiocFileCache for developers Dec 1, 2017 Michael Love BiocFileCache for developers Dec 1, 2017 Michael Love BiocFileCache for developers Dec 9, 2017 Michael Love workflow page reorganization Dec 15, 2017

Obenchain, Valerie

Last active: Dec 22, 2017
6 msgs
Obenchain, Valerie a possible bug in development version of GenomicAlignments Dec 1, 2017 Obenchain, Valerie packages modifying 'library' during R CMD check Dec 4, 2017 Obenchain, Valerie splitting simpleSingleCell into self-contained vignettes Dec 11, 2017 Obenchain, Valerie canceR problems reported in the Multiple platform build/check report for BioC 3.6 Dec 11, 2017 Obenchain, Valerie release builds Dec 18, 2017 Obenchain, Valerie no build reports today Dec 22, 2017

Ou, Jianhong

Last active: Dec 20, 2017
3 msgs
Ou, Jianhong a possible bug in development version of GenomicAlignments Dec 1, 2017 Ou, Jianhong Rsamtools does not export "path" Dec 18, 2017 Ou, Jianhong Rsamtools does not export "path" Dec 20, 2017

Pariksheet Nanda

Last active: Dec 11, 2017
1 msg
Pariksheet Nanda parallel processing in R? Dec 11, 2017

Paul Brennan

Last active: Dec 21, 2017
1 msg
Paul Brennan starting a build... but no result... Dec 21, 2017

Paul Theodor Pyl

Last active: Dec 21, 2017
1 msg
Paul Theodor Pyl Incrimental writing to HDF5 / DelayedMatrix Dec 21, 2017

Rainer Johannes

Last active: Dec 19, 2017
3 msgs
Rainer Johannes packages modifying 'library' during R CMD check Dec 2, 2017 Rainer Johannes mapping between genomic, transcript and protein positions in ensembldb Dec 6, 2017 Rainer Johannes fixing 'path' not being exported by 'Rsamtools' Dec 19, 2017

Robert Castelo

Last active: Dec 19, 2017
2 msgs
Robert Castelo fixing 'path' not being exported by 'Rsamtools' Dec 19, 2017 Robert Castelo fixing 'path' not being exported by 'Rsamtools' Dec 19, 2017

Sean Davis

Last active: Dec 5, 2017
3 msgs
Sean Davis BiocFileCache for developers Dec 1, 2017 Sean Davis BiocFileCache for developers Dec 1, 2017 Sean Davis Data package timeouts Dec 5, 2017

Shepherd, Lori

Last active: Dec 22, 2017
18 msgs
Shepherd, Lori BiocFileCache for developers Dec 1, 2017 Shepherd, Lori BiocFileCache for developers Dec 1, 2017 Shepherd, Lori BiocFileCache for developers Dec 1, 2017 Shepherd, Lori no OSX repo for R 3.4.3 Dec 6, 2017 Shepherd, Lori no OSX repo for R 3.4.3 Dec 6, 2017 Shepherd, Lori last check fails on windows server with not reproducible error Dec 11, 2017 Shepherd, Lori Single Package Builder Updates and Testing Dec 11, 2017 Shepherd, Lori Errors and warnings while submitting package Dec 11, 2017 Shepherd, Lori Version update question and an error? Dec 12, 2017 Shepherd, Lori Single Package Builder Updates and Testing Dec 13, 2017 Shepherd, Lori workflow page reorganization Dec 15, 2017 Shepherd, Lori Updated Deprecated Package List for Bioc 3.7 Dec 15, 2017 Shepherd, Lori workflow page reorganization Dec 15, 2017 Shepherd, Lori GSE62944, empty EH164 and EH165 Dec 15, 2017 Shepherd, Lori ensembl 91 gtfs and fasta twobits have been added to AnnotationHub Dec 21, 2017 Shepherd, Lori starting a build... but no result... Dec 21, 2017 Shepherd, Lori Submit data package or use AnnotationHub? Dec 22, 2017 Shepherd, Lori BiocFileCache for developers Dec 22, 2017

Sitte, Maren

Last active: Dec 11, 2017
1 msg
Sitte, Maren last check fails on windows server with not reproducible error Dec 11, 2017

Steve Lianoglou

Last active: Dec 21, 2017
1 msg
Steve Lianoglou Submit data package or use AnnotationHub? Dec 21, 2017

Tiago Chedraoui Silva

Last active: Dec 6, 2017
1 msg
Tiago Chedraoui Silva Workflow - missing library in server Dec 6, 2017

Tim Triche, Jr.

Last active: Dec 7, 2017
1 msg
Tim Triche, Jr. 'IlluminaHumanMethylation450k.db' package installation Dec 7, 2017

Turaga, Nitesh

Last active: Dec 15, 2017
6 msgs
Turaga, Nitesh cherry picking fixes to release Dec 4, 2017 Turaga, Nitesh pushing from github to bioconductor, skipping local machine Dec 4, 2017 Turaga, Nitesh DaMiRseq: error while pushing Dec 12, 2017 Turaga, Nitesh Question about Access to Bioconductor through Git Dec 13, 2017 Turaga, Nitesh git push to Bioconductor failing Dec 15, 2017 Turaga, Nitesh Updating bioconductor after computer transfer - problem Dec 15, 2017

Tyler Smith

Last active: Dec 4, 2017
2 msgs
Tyler Smith pushing from github to bioconductor, skipping local machine Dec 4, 2017 Tyler Smith pushing from github to bioconductor, skipping local machine Dec 4, 2017

Vladimir Kiselev

Last active: Dec 10, 2017
1 msg
Vladimir Kiselev Pandoc issues Dec 10, 2017

Wolfgang Huber

Last active: Dec 17, 2017
1 msg
Wolfgang Huber workflow page reorganization Dec 17, 2017