Bioc-devel - January 2018 - Thread View

[Bioc-devel] updating Bioconductor package that is already on Github

10 msgs Jan 31

Simina Boca updating Bioconductor package that is already on Github Jan 26, 2018

Turaga, Nitesh updating Bioconductor package that is already on Github Jan 26, 2018

Simina Boca updating Bioconductor package that is already on Github Jan 26, 2018

Turaga, Nitesh updating Bioconductor package that is already on Github Jan 26, 2018

Simina Boca updating Bioconductor package that is already on Github Jan 28, 2018

Simina Boca updating Bioconductor package that is already on Github Jan 30, 2018

Turaga, Nitesh updating Bioconductor package that is already on Github Jan 30, 2018

Simina Boca updating Bioconductor package that is already on Github Jan 30, 2018

Turaga, Nitesh updating Bioconductor package that is already on Github Jan 31, 2018

Simina Boca updating Bioconductor package that is already on Github Jan 31, 2018

[Bioc-devel] BiocParallel: windows vs. mac/linux behavior

2 msgs Jan 31

Ludwig Geistlinger BiocParallel: windows vs. mac/linux behavior Jan 31, 2018

Martin Morgan BiocParallel: windows vs. mac/linux behavior Jan 31, 2018

[Bioc-devel] error in loading pbdMPI on tokay2

2 msgs Jan 31

Armen Abnousi error in loading pbdMPI on tokay2 Jan 27, 2018

Obenchain, Valerie error in loading pbdMPI on tokay2 Jan 31, 2018

[Bioc-devel] Duplicate Commits in ASSIGN Package

3 msgs Jan 31

Turaga, Nitesh Duplicate Commits in ASSIGN Package Jan 31, 2018

Jenkins, David Duplicate Commits in ASSIGN Package Jan 31, 2018

Turaga, Nitesh Duplicate Commits in ASSIGN Package Jan 31, 2018

[Bioc-devel] cannot fetch upstream git

2 msgs Jan 31

bruno contrino cannot fetch upstream git Jan 30, 2018

Obenchain, Valerie cannot fetch upstream git Jan 31, 2018

[Bioc-devel] Alpha release of the iSEE visualization tool

1 msg Jan 31

Aaron Lun Alpha release of the iSEE visualization tool Jan 31, 2018

[Bioc-devel] Should GenomicFeatures really depend pn RMySQL ? Is it time to migrate to RMariaDB ?

8 msgs Jan 30

Wolfgang Huber Should GenomicFeatures really depend pn RMySQL ? Is it time to migrate to RMariaDB ? Jan 24, 2018

Martin Morgan Should GenomicFeatures really depend pn RMySQL ? Is it time to migrate to RMariaDB ? Jan 26, 2018

Vincent Carey Should GenomicFeatures really depend pn RMySQL ? Is it time to migrate to RMariaDB ? Jan 26, 2018

Tim Triche, Jr. Should GenomicFeatures really depend pn RMySQL ? Is it time to migrate to RMariaDB ? Jan 26, 2018

Hervé Pagès Should GenomicFeatures really depend pn RMySQL ? Is it time to migrate to RMariaDB ? Jan 26, 2018

Wolfgang Huber Should GenomicFeatures really depend pn RMySQL ? Is it time to migrate to RMariaDB ? Jan 26, 2018

Kasper Daniel Hansen Should GenomicFeatures really depend pn RMySQL ? Is it time to migrate to RMariaDB ? Jan 26, 2018

Hervé Pagès Should GenomicFeatures really depend pn RMySQL ? Is it time to migrate to RMariaDB ? Jan 30, 2018

[Bioc-devel] Vignettes location in BiocCheck vs R CMD check

6 msgs Jan 29

Armen Abnousi Vignettes location in BiocCheck vs R CMD check Jan 29, 2018

Martin Morgan Vignettes location in BiocCheck vs R CMD check Jan 29, 2018

Diego Morais Vignettes location in BiocCheck vs R CMD check Jan 29, 2018

Armen Abnousi Vignettes location in BiocCheck vs R CMD check Jan 29, 2018

Kasper Daniel Hansen Vignettes location in BiocCheck vs R CMD check Jan 29, 2018

Armen Abnousi Vignettes location in BiocCheck vs R CMD check Jan 29, 2018

[Bioc-devel] Linking up to polyester and ballgown

2 msgs Jan 29

Jack Fu Linking up to polyester and ballgown Jan 29, 2018

Obenchain, Valerie Linking up to polyester and ballgown Jan 29, 2018

[Bioc-devel] conditions on vectors of length > 1 Warning/ERROR

3 msgs Jan 29

Shepherd, Lori conditions on vectors of length > 1 Warning/ERROR Jan 25, 2018

Charles Warden conditions on vectors of length > 1 Warning/ERROR Jan 27, 2018

Shepherd, Lori conditions on vectors of length > 1 Warning/ERROR Jan 29, 2018

[Bioc-devel] NanoStringDiff package update

9 msgs Jan 26

Shepherd, Lori NanoStringDiff package update Jan 25, 2018

Zhai, Tingting NanoStringDiff package update Jan 25, 2018

Shepherd, Lori NanoStringDiff package update Jan 25, 2018

Zhai, Tingting NanoStringDiff package update Jan 25, 2018

Shepherd, Lori NanoStringDiff package update Jan 25, 2018

Zhai, Tingting NanoStringDiff package update Jan 25, 2018

Shepherd, Lori NanoStringDiff package update Jan 25, 2018

Zhai, Tingting NanoStringDiff package update Jan 25, 2018

Shepherd, Lori NanoStringDiff package update Jan 26, 2018

[Bioc-devel] Version bumps

4 msgs Jan 25

Martin Morgan Version bumps Jan 19, 2018

Yuande Tan Version bumps Jan 22, 2018

Martin Morgan Version bumps Jan 23, 2018

Martin Morgan Version bumps Jan 25, 2018

[Bioc-devel] NanoStringDiff package update

2 msgs Jan 25

Zhai, Tingting NanoStringDiff package update Jan 24, 2018

Shepherd, Lori NanoStringDiff package update Jan 25, 2018

[Bioc-devel] not all bioc packages visible on github?

3 msgs Jan 25

Paul Shannon not all bioc packages visible on github? Jan 24, 2018

Robert M. Flight not all bioc packages visible on github? Jan 24, 2018

Mike Smith not all bioc packages visible on github? Jan 25, 2018

[Bioc-devel] Duplicate Commits in ASSIGN Package

2 msgs Jan 24

Jenkins, David Duplicate Commits in ASSIGN Package Jan 24, 2018

Turaga, Nitesh Duplicate Commits in ASSIGN Package Jan 24, 2018

[Bioc-devel] Permission denied when fetching from BioC GitHub repository

6 msgs Jan 24

Federico C Permission denied when fetching from BioC GitHub repository Jan 23, 2018

Obenchain, Valerie Permission denied when fetching from BioC GitHub repository Jan 23, 2018

Federico C Permission denied when fetching from BioC GitHub repository Jan 23, 2018

Federico C Permission denied when fetching from BioC GitHub repository Jan 24, 2018

Turaga, Nitesh Permission denied when fetching from BioC GitHub repository Jan 24, 2018

Federico C Permission denied when fetching from BioC GitHub repository Jan 24, 2018

[Bioc-devel] Push to git not updating correctly

2 msgs Jan 22

Clare Pacini Push to git not updating correctly Jan 19, 2018

Turaga, Nitesh Push to git not updating correctly Jan 22, 2018

[Bioc-devel] project templating tools

3 msgs Jan 22

Vincent Carey project templating tools Jan 21, 2018

Nima Hejazi project templating tools Jan 21, 2018

Michael Lawrence project templating tools Jan 22, 2018

[Bioc-devel] BiocParallel and AnnotationDbi: database disk image is malformed

8 msgs Jan 19

Ludwig Geistlinger BiocParallel and AnnotationDbi: database disk image is malformed Jan 19, 2018

Vincent Carey BiocParallel and AnnotationDbi: database disk image is malformed Jan 19, 2018

Gabriel Becker BiocParallel and AnnotationDbi: database disk image is malformed Jan 19, 2018

Martin Morgan BiocParallel and AnnotationDbi: database disk image is malformed Jan 19, 2018

Ludwig Geistlinger BiocParallel and AnnotationDbi: database disk image is malformed Jan 19, 2018

Martin Morgan BiocParallel and AnnotationDbi: database disk image is malformed Jan 19, 2018

Ludwig Geistlinger BiocParallel and AnnotationDbi: database disk image is malformed Jan 19, 2018

[Bioc-devel] Duplicate commits for hpar was [Re: Duplicate commits in Bioconductor commit history]

1 msg Jan 19

Turaga, Nitesh Duplicate commits for hpar was [Re: Duplicate commits in Bioconductor commit history] Jan 19, 2018

[Bioc-devel] List of Deprecated Packages for Bioc3.7

1 msg Jan 19

Shepherd, Lori List of Deprecated Packages for Bioc3.7 Jan 19, 2018

[Bioc-devel] Duplicate commits for hpar was [Re: Duplicate commits in Bioconductor commit history]

2 msgs Jan 19

Turaga, Nitesh Duplicate commits for hpar was [Re: Duplicate commits in Bioconductor commit history] Jan 19, 2018

[Bioc-devel] CINdex package build error in Linux

3 msgs Jan 19

Krithika Bhuvaneshwar CINdex package build error in Linux Jan 18, 2018

Obenchain, Valerie CINdex package build error in Linux Jan 19, 2018

Yuriy Gusev CINdex package build error in Linux Jan 19, 2018

[Bioc-devel] need git push permission for mtbls2

2 msgs Jan 19

Neumann, Steffen need git push permission for mtbls2 Jan 19, 2018

Turaga, Nitesh need git push permission for mtbls2 Jan 19, 2018

[Bioc-devel] unable to push to bioconductor git

2 msgs Jan 18

Davy Cats unable to push to bioconductor git Jan 18, 2018

Turaga, Nitesh unable to push to bioconductor git Jan 18, 2018

[Bioc-devel] git permission denied to synapter repository

3 msgs Jan 17

Sebastian Gibb git permission denied to synapter repository Jan 17, 2018

Turaga, Nitesh git permission denied to synapter repository Jan 17, 2018

Sebastian Gibb git permission denied to synapter repository Jan 17, 2018

[Bioc-devel] Missing link files in Windows (release and devel)

7 msgs Jan 17

Leonardo Collado Torres Missing link files in Windows (release and devel) Jan 16, 2018

Martin Morgan Missing link files in Windows (release and devel) Jan 16, 2018

Leonardo Collado Torres Missing link files in Windows (release and devel) Jan 17, 2018

James W. MacDonald Missing link files in Windows (release and devel) Jan 17, 2018

Stephanie M. Gogarten Missing link files in Windows (release and devel) Jan 17, 2018

Leonardo Collado Torres Missing link files in Windows (release and devel) Jan 17, 2018

Martin Morgan Missing link files in Windows (release and devel) Jan 17, 2018

[Bioc-devel] "Duplicate commits" after when pushing change right after doing a clean `git clone git@git.bioconductor.org:packages/chimeraviz`

6 msgs Jan 17

Stian Lågstad "Duplicate commits" after when pushing change right after doing a clean `git clone git@git.bioconductor.org:packages/chimeraviz` Jan 13, 2018

Turaga, Nitesh "Duplicate commits" after when pushing change right after doing a clean `git clone git@git.bioconductor.org:packages/chimeraviz` Jan 13, 2018

Turaga, Nitesh "Duplicate commits" after when pushing change right after doing a clean `git clone git@git.bioconductor.org:packages/chimeraviz` Jan 17, 2018

Stian Lågstad "Duplicate commits" after when pushing change right after doing a clean `git clone git@git.bioconductor.org:packages/chimeraviz` Jan 17, 2018

Turaga, Nitesh "Duplicate commits" after when pushing change right after doing a clean `git clone git@git.bioconductor.org:packages/chimeraviz` Jan 17, 2018

Laurent Gatto "Duplicate commits" after when pushing change right after doing a clean `git clone git@git.bioconductor.org:packages/chimeraviz` Jan 17, 2018

[Bioc-devel] Duplicate commit error when pushing to annotatr upstream/master

3 msgs Jan 17

Raymond Cavalcante Duplicate commit error when pushing to annotatr upstream/master Jan 8, 2018

Turaga, Nitesh Duplicate commit error when pushing to annotatr upstream/master Jan 9, 2018

Turaga, Nitesh Duplicate commit error when pushing to annotatr upstream/master Jan 17, 2018

[Bioc-devel] Duplicate commits in Bioconductor commit history

3 msgs Jan 17

Laurent Gatto Duplicate commits in Bioconductor commit history Jan 16, 2018

Laurent Gatto Duplicate commits in Bioconductor commit history Jan 17, 2018

Turaga, Nitesh Duplicate commits in Bioconductor commit history Jan 17, 2018

[Bioc-devel] Question regarding potential package

2 msgs Jan 16

Rupji, Manali Question regarding potential package Jan 16, 2018

Martin Morgan Question regarding potential package Jan 16, 2018

[Bioc-devel] Problems creating a new GitHub repository for an existing Bioconductor package

2 msgs Jan 16

Pau Bellot Pujalte Problems creating a new GitHub repository for an existing Bioconductor package Jan 16, 2018

Turaga, Nitesh Problems creating a new GitHub repository for an existing Bioconductor package Jan 16, 2018

[Bioc-devel] Numeric Operation on DataFrame

3 msgs Jan 16

Dario Strbenac Numeric Operation on DataFrame Jan 15, 2018

Michael Lawrence Numeric Operation on DataFrame Jan 16, 2018

Hervé Pagès Numeric Operation on DataFrame Jan 16, 2018

[Bioc-devel] I cannot reproduce the error my package raises in production

2 msgs Jan 15

Carles Hernández I cannot reproduce the error my package raises in production Jan 15, 2018

Martin Morgan I cannot reproduce the error my package raises in production Jan 15, 2018

[Bioc-devel] Changing package maintainer: git credentials

2 msgs Jan 13

Liz Ing-Simmons Changing package maintainer: git credentials Jan 13, 2018

Turaga, Nitesh Changing package maintainer: git credentials Jan 13, 2018

[Bioc-devel] No write permissions to push changes to my devel package

2 msgs Jan 11

Andreas Kapouranis No write permissions to push changes to my devel package Jan 11, 2018

Turaga, Nitesh No write permissions to push changes to my devel package Jan 11, 2018

[Bioc-devel] mzR build failure on Windows: missing HDF5 libraries

7 msgs Jan 11

Neumann, Steffen mzR build failure on Windows: missing HDF5 libraries Jan 2, 2018

Martin Morgan mzR build failure on Windows: missing HDF5 libraries Jan 2, 2018

Mike Smith mzR build failure on Windows: missing HDF5 libraries Jan 3, 2018

Martin Morgan mzR build failure on Windows: missing HDF5 libraries Jan 5, 2018

Neumann, Steffen mzR build failure on Windows: missing HDF5 libraries Jan 7, 2018

Rainer Johannes mzR build failure on Windows: missing HDF5 libraries Jan 7, 2018

Neumann, Steffen mzR build failure on Windows: missing HDF5 libraries Jan 11, 2018

[Bioc-devel] git help

12 msgs Jan 9

Kevin Horan git help Jan 3, 2018

Turaga, Nitesh git help Jan 3, 2018

Kevin Horan git help Jan 3, 2018

Turaga, Nitesh git help Jan 4, 2018

Turaga, Nitesh git help Jan 5, 2018

Kevin Horan git help Jan 7, 2018

Turaga, Nitesh git help Jan 7, 2018

Kevin Horan git help Jan 8, 2018

Turaga, Nitesh git help Jan 9, 2018

Kevin Horan git help Jan 9, 2018

[Bioc-devel] chipenrich bioc builds timeout not reproducible

2 msgs Jan 8

Raymond Cavalcante chipenrich bioc builds timeout not reproducible Jan 8, 2018

Obenchain, Valerie chipenrich bioc builds timeout not reproducible Jan 8, 2018

[Bioc-devel] segfaults in findOverlaps()

1 msg Jan 8

Hervé Pagès segfaults in findOverlaps() Jan 8, 2018

[Bioc-devel] ensembl release build policy update and potential need to update Bioconductor code

1 msg Jan 8

Shepherd, Lori ensembl release build policy update and potential need to update Bioconductor code Jan 8, 2018

[Bioc-devel] differential expression tools for proteins

5 msgs Jan 8

Cardin Julie differential expression tools for proteins Jan 6, 2018

Diego Morais differential expression tools for proteins Jan 6, 2018

Wolfgang Huber differential expression tools for proteins Jan 7, 2018

Wolfgang Huber search - was: differential expression tools for proteins Jan 7, 2018

Martin Morgan search - was: differential expression tools for proteins Jan 8, 2018

[Bioc-devel] Changes to rhdf5

3 msgs Jan 8

Mike Smith Changes to rhdf5 Jan 5, 2018

Aaron Lun Changes to rhdf5 Jan 5, 2018

Mike Smith Changes to rhdf5 Jan 8, 2018

[Bioc-devel] Can I push a new branch to Bioconductor git?

2 msgs Jan 7

Stian Lågstad Can I push a new branch to Bioconductor git? Jan 7, 2018

Turaga, Nitesh Can I push a new branch to Bioconductor git? Jan 7, 2018

[Bioc-devel] EXTERNAL: Re: DOI for packages

2 msgs Jan 5

Nathan Sheffield EXTERNAL: Re: DOI for packages Jan 5, 2018

Sean Davis EXTERNAL: Re: DOI for packages Jan 5, 2018

[Bioc-devel] Updated Deprecated Package List for Bioc 3.7

1 msg Jan 5

Shepherd, Lori Updated Deprecated Package List for Bioc 3.7 Jan 5, 2018

[Bioc-devel] RSS feed on bioconductor.org/developers/gitlog

1 msg Jan 5

Turaga, Nitesh RSS feed on bioconductor.org/developers/gitlog Jan 5, 2018

[Bioc-devel] Issue with dependencies on Windows (tokay2)

2 msgs Jan 4

Hoffman, Gabriel Issue with dependencies on Windows (tokay2) Jan 3, 2018

Obenchain, Valerie Issue with dependencies on Windows (tokay2) Jan 4, 2018

[Bioc-devel] RSS feed on bioconductor.org/developers/gitlog

4 msgs Jan 3

Turaga, Nitesh RSS feed on bioconductor.org/developers/gitlog Jan 2, 2018

Obenchain, Valerie RSS feed on bioconductor.org/developers/gitlog Jan 2, 2018

Lluís Revilla RSS feed on bioconductor.org/developers/gitlog Jan 3, 2018

Turaga, Nitesh RSS feed on bioconductor.org/developers/gitlog Jan 3, 2018

[Bioc-devel] Fwd: [SIAM-LS] New NSF funding opportunity: Rules of Life (RoL): Forecasting and Emergence in Living Systems

1 msg Jan 2

Sean Davis New NSF funding opportunity: Rules of Life (RoL): Forecasting and Emergence in Living Systems Jan 2, 2018

Bioc-devel January 2018