Bioc-devel - January 2018 - Date View

Wednesday, January 31, 2018 10 emails

Simina Boca updating Bioconductor package that is already on Github Martin Morgan BiocParallel: windows vs. mac/linux behavior Ludwig Geistlinger BiocParallel: windows vs. mac/linux behavior Obenchain, Valerie error in loading pbdMPI on tokay2 Turaga, Nitesh Duplicate Commits in ASSIGN Package Jenkins, David Duplicate Commits in ASSIGN Package Turaga, Nitesh Duplicate Commits in ASSIGN Package Obenchain, Valerie cannot fetch upstream git Turaga, Nitesh updating Bioconductor package that is already on Github Aaron Lun Alpha release of the iSEE visualization tool

Tuesday, January 30, 2018 5 emails

Simina Boca updating Bioconductor package that is already on Github Turaga, Nitesh updating Bioconductor package that is already on Github Simina Boca updating Bioconductor package that is already on Github Hervé Pagès Should GenomicFeatures really depend pn RMySQL ? Is it time to migrate to RMariaDB ? bruno contrino cannot fetch upstream git

Monday, January 29, 2018 9 emails

Armen Abnousi Vignettes location in BiocCheck vs R CMD check Kasper Daniel Hansen Vignettes location in BiocCheck vs R CMD check Armen Abnousi Vignettes location in BiocCheck vs R CMD check Diego Morais Vignettes location in BiocCheck vs R CMD check Martin Morgan Vignettes location in BiocCheck vs R CMD check Armen Abnousi Vignettes location in BiocCheck vs R CMD check Obenchain, Valerie Linking up to polyester and ballgown Jack Fu Linking up to polyester and ballgown Shepherd, Lori conditions on vectors of length > 1 Warning/ERROR

Sunday, January 28, 2018 1 email

Simina Boca updating Bioconductor package that is already on Github

Saturday, January 27, 2018 2 emails

Charles Warden conditions on vectors of length > 1 Warning/ERROR Armen Abnousi error in loading pbdMPI on tokay2

Friday, January 26, 2018 11 emails

Kasper Daniel Hansen Should GenomicFeatures really depend pn RMySQL ? Is it time to migrate to RMariaDB ? Wolfgang Huber Should GenomicFeatures really depend pn RMySQL ? Is it time to migrate to RMariaDB ? Turaga, Nitesh updating Bioconductor package that is already on Github Simina Boca updating Bioconductor package that is already on Github Turaga, Nitesh updating Bioconductor package that is already on Github Hervé Pagès Should GenomicFeatures really depend pn RMySQL ? Is it time to migrate to RMariaDB ? Simina Boca updating Bioconductor package that is already on Github Tim Triche, Jr. Should GenomicFeatures really depend pn RMySQL ? Is it time to migrate to RMariaDB ? Vincent Carey Should GenomicFeatures really depend pn RMySQL ? Is it time to migrate to RMariaDB ? Martin Morgan Should GenomicFeatures really depend pn RMySQL ? Is it time to migrate to RMariaDB ? Shepherd, Lori NanoStringDiff package update

Thursday, January 25, 2018 12 emails

Wednesday, January 24, 2018 9 emails

Robert M. Flight not all bioc packages visible on github? Paul Shannon not all bioc packages visible on github? Wolfgang Huber Should GenomicFeatures really depend pn RMySQL ? Is it time to migrate to RMariaDB ? Zhai, Tingting NanoStringDiff package update Turaga, Nitesh Duplicate Commits in ASSIGN Package Jenkins, David Duplicate Commits in ASSIGN Package Federico C Permission denied when fetching from BioC GitHub repository Turaga, Nitesh Permission denied when fetching from BioC GitHub repository Federico C Permission denied when fetching from BioC GitHub repository

Tuesday, January 23, 2018 4 emails

Federico C Permission denied when fetching from BioC GitHub repository Obenchain, Valerie Permission denied when fetching from BioC GitHub repository Federico C Permission denied when fetching from BioC GitHub repository Martin Morgan Version bumps

Monday, January 22, 2018 3 emails

Yuande Tan Version bumps Turaga, Nitesh Push to git not updating correctly Michael Lawrence project templating tools

Sunday, January 21, 2018 2 emails

Nima Hejazi project templating tools Vincent Carey project templating tools

Friday, January 19, 2018 18 emails

Thursday, January 18, 2018 3 emails

Krithika Bhuvaneshwar CINdex package build error in Linux Turaga, Nitesh unable to push to bioconductor git Davy Cats unable to push to bioconductor git

Wednesday, January 17, 2018 15 emails

Sebastian Gibb git permission denied to synapter repository Turaga, Nitesh git permission denied to synapter repository Martin Morgan Missing link files in Windows (release and devel) Sebastian Gibb git permission denied to synapter repository Laurent Gatto "Duplicate commits" after when pushing change right after doing a clean `git clone git@git.bioconductor.org:packages/chimeraviz` Leonardo Collado Torres Missing link files in Windows (release and devel) Turaga, Nitesh "Duplicate commits" after when pushing change right after doing a clean `git clone git@git.bioconductor.org:packages/chimeraviz` Stian Lågstad "Duplicate commits" after when pushing change right after doing a clean `git clone git@git.bioconductor.org:packages/chimeraviz` Turaga, Nitesh Duplicate commit error when pushing to annotatr upstream/master Turaga, Nitesh "Duplicate commits" after when pushing change right after doing a clean `git clone git@git.bioconductor.org:packages/chimeraviz` Turaga, Nitesh Duplicate commits in Bioconductor commit history Laurent Gatto Duplicate commits in Bioconductor commit history Stephanie M. Gogarten Missing link files in Windows (release and devel) James W. MacDonald Missing link files in Windows (release and devel) Leonardo Collado Torres Missing link files in Windows (release and devel)

Tuesday, January 16, 2018 9 emails

Martin Morgan Question regarding potential package Martin Morgan Missing link files in Windows (release and devel) Rupji, Manali Question regarding potential package Turaga, Nitesh Problems creating a new GitHub repository for an existing Bioconductor package Hervé Pagès Numeric Operation on DataFrame Leonardo Collado Torres Missing link files in Windows (release and devel) Laurent Gatto Duplicate commits in Bioconductor commit history Michael Lawrence Numeric Operation on DataFrame Pau Bellot Pujalte Problems creating a new GitHub repository for an existing Bioconductor package

Monday, January 15, 2018 3 emails

Dario Strbenac Numeric Operation on DataFrame Martin Morgan I cannot reproduce the error my package raises in production Carles Hernández I cannot reproduce the error my package raises in production

Saturday, January 13, 2018 4 emails

Turaga, Nitesh "Duplicate commits" after when pushing change right after doing a clean `git clone git@git.bioconductor.org:packages/chimeraviz` Turaga, Nitesh Changing package maintainer: git credentials Liz Ing-Simmons Changing package maintainer: git credentials Stian Lågstad "Duplicate commits" after when pushing change right after doing a clean `git clone git@git.bioconductor.org:packages/chimeraviz`

Thursday, January 11, 2018 3 emails

Turaga, Nitesh No write permissions to push changes to my devel package Andreas Kapouranis No write permissions to push changes to my devel package Neumann, Steffen mzR build failure on Windows: missing HDF5 libraries

Tuesday, January 9, 2018 3 emails

Kevin Horan git help Turaga, Nitesh Duplicate commit error when pushing to annotatr upstream/master Turaga, Nitesh git help

Monday, January 8, 2018 8 emails

Kevin Horan git help Obenchain, Valerie chipenrich bioc builds timeout not reproducible Raymond Cavalcante Duplicate commit error when pushing to annotatr upstream/master Hervé Pagès segfaults in findOverlaps() Shepherd, Lori ensembl release build policy update and potential need to update Bioconductor code Raymond Cavalcante chipenrich bioc builds timeout not reproducible Martin Morgan search - was: differential expression tools for proteins Mike Smith Changes to rhdf5

Sunday, January 7, 2018 10 emails

Rainer Johannes mzR build failure on Windows: missing HDF5 libraries Neumann, Steffen mzR build failure on Windows: missing HDF5 libraries Turaga, Nitesh git help Turaga, Nitesh git help Turaga, Nitesh git help Kevin Horan git help Turaga, Nitesh Can I push a new branch to Bioconductor git? Wolfgang Huber search - was: differential expression tools for proteins Wolfgang Huber differential expression tools for proteins Stian Lågstad Can I push a new branch to Bioconductor git?

Saturday, January 6, 2018 2 emails

Diego Morais differential expression tools for proteins Cardin Julie differential expression tools for proteins

Friday, January 5, 2018 8 emails

Turaga, Nitesh git help Sean Davis EXTERNAL: Re: DOI for packages Aaron Lun Changes to rhdf5 Martin Morgan mzR build failure on Windows: missing HDF5 libraries Shepherd, Lori Updated Deprecated Package List for Bioc 3.7 Nathan Sheffield EXTERNAL: Re: DOI for packages Turaga, Nitesh RSS feed on bioconductor.org/developers/gitlog Mike Smith Changes to rhdf5

Thursday, January 4, 2018 2 emails

Obenchain, Valerie Issue with dependencies on Windows (tokay2) Turaga, Nitesh git help

Wednesday, January 3, 2018 7 emails

Kevin Horan git help Turaga, Nitesh git help Kevin Horan git help Hoffman, Gabriel Issue with dependencies on Windows (tokay2) Turaga, Nitesh RSS feed on bioconductor.org/developers/gitlog Lluís Revilla RSS feed on bioconductor.org/developers/gitlog Mike Smith mzR build failure on Windows: missing HDF5 libraries

Tuesday, January 2, 2018 5 emails

Obenchain, Valerie RSS feed on bioconductor.org/developers/gitlog Turaga, Nitesh RSS feed on bioconductor.org/developers/gitlog Martin Morgan mzR build failure on Windows: missing HDF5 libraries Neumann, Steffen mzR build failure on Windows: missing HDF5 libraries Sean Davis New NSF funding opportunity: Rules of Life (RoL): Forecasting and Emergence in Living Systems

Bioc-devel January 2018