Bioc-devel January 2018
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Wednesday, January 31, 2018 10 emails
Simina Boca
updating Bioconductor package that is already on Github
Martin Morgan
BiocParallel: windows vs. mac/linux behavior
Ludwig Geistlinger
BiocParallel: windows vs. mac/linux behavior
Obenchain, Valerie
error in loading pbdMPI on tokay2
Turaga, Nitesh
Duplicate Commits in ASSIGN Package
Jenkins, David
Duplicate Commits in ASSIGN Package
Turaga, Nitesh
Duplicate Commits in ASSIGN Package
Obenchain, Valerie
cannot fetch upstream git
Turaga, Nitesh
updating Bioconductor package that is already on Github
Aaron Lun
Alpha release of the iSEE visualization tool
Tuesday, January 30, 2018 5 emails
Simina Boca
updating Bioconductor package that is already on Github
Turaga, Nitesh
updating Bioconductor package that is already on Github
Simina Boca
updating Bioconductor package that is already on Github
Hervé Pagès
Should GenomicFeatures really depend pn RMySQL ? Is it time to migrate to RMariaDB ?
bruno contrino
cannot fetch upstream git
Monday, January 29, 2018 9 emails
Armen Abnousi
Vignettes location in BiocCheck vs R CMD check
Kasper Daniel Hansen
Vignettes location in BiocCheck vs R CMD check
Armen Abnousi
Vignettes location in BiocCheck vs R CMD check
Diego Morais
Vignettes location in BiocCheck vs R CMD check
Martin Morgan
Vignettes location in BiocCheck vs R CMD check
Armen Abnousi
Vignettes location in BiocCheck vs R CMD check
Obenchain, Valerie
Linking up to polyester and ballgown
Jack Fu
Linking up to polyester and ballgown
Shepherd, Lori
conditions on vectors of length > 1 Warning/ERROR
Sunday, January 28, 2018 1 email
Saturday, January 27, 2018 2 emails
Friday, January 26, 2018 11 emails
Kasper Daniel Hansen
Should GenomicFeatures really depend pn RMySQL ? Is it time to migrate to RMariaDB ?
Wolfgang Huber
Should GenomicFeatures really depend pn RMySQL ? Is it time to migrate to RMariaDB ?
Turaga, Nitesh
updating Bioconductor package that is already on Github
Simina Boca
updating Bioconductor package that is already on Github
Turaga, Nitesh
updating Bioconductor package that is already on Github
Hervé Pagès
Should GenomicFeatures really depend pn RMySQL ? Is it time to migrate to RMariaDB ?
Simina Boca
updating Bioconductor package that is already on Github
Tim Triche, Jr.
Should GenomicFeatures really depend pn RMySQL ? Is it time to migrate to RMariaDB ?
Vincent Carey
Should GenomicFeatures really depend pn RMySQL ? Is it time to migrate to RMariaDB ?
Martin Morgan
Should GenomicFeatures really depend pn RMySQL ? Is it time to migrate to RMariaDB ?
Shepherd, Lori
NanoStringDiff package update
Thursday, January 25, 2018 12 emails
Zhai, Tingting
NanoStringDiff package update
Shepherd, Lori
NanoStringDiff package update
Zhai, Tingting
NanoStringDiff package update
Shepherd, Lori
NanoStringDiff package update
Zhai, Tingting
NanoStringDiff package update
Shepherd, Lori
conditions on vectors of length > 1 Warning/ERROR
Shepherd, Lori
NanoStringDiff package update
Zhai, Tingting
NanoStringDiff package update
Martin Morgan
Version bumps
Shepherd, Lori
NanoStringDiff package update
Shepherd, Lori
NanoStringDiff package update
Mike Smith
not all bioc packages visible on github?
Wednesday, January 24, 2018 9 emails
Robert M. Flight
not all bioc packages visible on github?
Paul Shannon
not all bioc packages visible on github?
Wolfgang Huber
Should GenomicFeatures really depend pn RMySQL ? Is it time to migrate to RMariaDB ?
Zhai, Tingting
NanoStringDiff package update
Turaga, Nitesh
Duplicate Commits in ASSIGN Package
Jenkins, David
Duplicate Commits in ASSIGN Package
Federico C
Permission denied when fetching from BioC GitHub repository
Turaga, Nitesh
Permission denied when fetching from BioC GitHub repository
Federico C
Permission denied when fetching from BioC GitHub repository
Tuesday, January 23, 2018 4 emails
Monday, January 22, 2018 3 emails
Sunday, January 21, 2018 2 emails
Friday, January 19, 2018 18 emails
Ludwig Geistlinger
BiocParallel and AnnotationDbi: database disk image is malformed
Martin Morgan
BiocParallel and AnnotationDbi: database disk image is malformed
Ludwig Geistlinger
BiocParallel and AnnotationDbi: database disk image is malformed
Martin Morgan
BiocParallel and AnnotationDbi: database disk image is malformed
Turaga, Nitesh
Duplicate commits for hpar was [Re: Duplicate commits in Bioconductor commit history]
Martin Morgan
BiocParallel and AnnotationDbi: database disk image is malformed
Shepherd, Lori
List of Deprecated Packages for Bioc3.7
Turaga, Nitesh
Duplicate commits for hpar was [Re: Duplicate commits in Bioconductor commit history]
Turaga, Nitesh
Duplicate commits for hpar was [Re: Duplicate commits in Bioconductor commit history]
Gabriel Becker
BiocParallel and AnnotationDbi: database disk image is malformed
Vincent Carey
BiocParallel and AnnotationDbi: database disk image is malformed
Yuriy Gusev
CINdex package build error in Linux
Ludwig Geistlinger
BiocParallel and AnnotationDbi: database disk image is malformed
Obenchain, Valerie
CINdex package build error in Linux
Clare Pacini
Push to git not updating correctly
Turaga, Nitesh
need git push permission for mtbls2
Martin Morgan
Version bumps
Neumann, Steffen
need git push permission for mtbls2
Thursday, January 18, 2018 3 emails
Wednesday, January 17, 2018 15 emails
Sebastian Gibb
git permission denied to synapter repository
Turaga, Nitesh
git permission denied to synapter repository
Martin Morgan
Missing link files in Windows (release and devel)
Sebastian Gibb
git permission denied to synapter repository
Laurent Gatto
"Duplicate commits" after when pushing change right after doing a clean `git clone git@git.bioconductor.org:packages/chimeraviz`
Leonardo Collado Torres
Missing link files in Windows (release and devel)
Turaga, Nitesh
"Duplicate commits" after when pushing change right after doing a clean `git clone git@git.bioconductor.org:packages/chimeraviz`
Stian Lågstad
"Duplicate commits" after when pushing change right after doing a clean `git clone git@git.bioconductor.org:packages/chimeraviz`
Turaga, Nitesh
Duplicate commit error when pushing to annotatr upstream/master
Turaga, Nitesh
"Duplicate commits" after when pushing change right after doing a clean `git clone git@git.bioconductor.org:packages/chimeraviz`
Turaga, Nitesh
Duplicate commits in Bioconductor commit history
Laurent Gatto
Duplicate commits in Bioconductor commit history
Stephanie M. Gogarten
Missing link files in Windows (release and devel)
James W. MacDonald
Missing link files in Windows (release and devel)
Leonardo Collado Torres
Missing link files in Windows (release and devel)
Tuesday, January 16, 2018 9 emails
Martin Morgan
Question regarding potential package
Martin Morgan
Missing link files in Windows (release and devel)
Rupji, Manali
Question regarding potential package
Turaga, Nitesh
Problems creating a new GitHub repository for an existing Bioconductor package
Hervé Pagès
Numeric Operation on DataFrame
Leonardo Collado Torres
Missing link files in Windows (release and devel)
Laurent Gatto
Duplicate commits in Bioconductor commit history
Michael Lawrence
Numeric Operation on DataFrame
Pau Bellot Pujalte
Problems creating a new GitHub repository for an existing Bioconductor package
Monday, January 15, 2018 3 emails
Saturday, January 13, 2018 4 emails
Turaga, Nitesh
"Duplicate commits" after when pushing change right after doing a clean `git clone git@git.bioconductor.org:packages/chimeraviz`
Turaga, Nitesh
Changing package maintainer: git credentials
Liz Ing-Simmons
Changing package maintainer: git credentials
Stian Lågstad
"Duplicate commits" after when pushing change right after doing a clean `git clone git@git.bioconductor.org:packages/chimeraviz`
Thursday, January 11, 2018 3 emails
Tuesday, January 9, 2018 3 emails
Monday, January 8, 2018 8 emails
Kevin Horan
git help
Obenchain, Valerie
chipenrich bioc builds timeout not reproducible
Raymond Cavalcante
Duplicate commit error when pushing to annotatr upstream/master
Hervé Pagès
segfaults in findOverlaps()
Shepherd, Lori
ensembl release build policy update and potential need to update Bioconductor code
Raymond Cavalcante
chipenrich bioc builds timeout not reproducible
Martin Morgan
search - was: differential expression tools for proteins
Mike Smith
Changes to rhdf5
Sunday, January 7, 2018 10 emails
Rainer Johannes
mzR build failure on Windows: missing HDF5 libraries
Neumann, Steffen
mzR build failure on Windows: missing HDF5 libraries
Turaga, Nitesh
git help
Turaga, Nitesh
git help
Turaga, Nitesh
git help
Kevin Horan
git help
Turaga, Nitesh
Can I push a new branch to Bioconductor git?
Wolfgang Huber
search - was: differential expression tools for proteins
Wolfgang Huber
differential expression tools for proteins
Stian Lågstad
Can I push a new branch to Bioconductor git?
Saturday, January 6, 2018 2 emails
Friday, January 5, 2018 8 emails
Turaga, Nitesh
git help
Sean Davis
EXTERNAL: Re: DOI for packages
Aaron Lun
Changes to rhdf5
Martin Morgan
mzR build failure on Windows: missing HDF5 libraries
Shepherd, Lori
Updated Deprecated Package List for Bioc 3.7
Nathan Sheffield
EXTERNAL: Re: DOI for packages
Turaga, Nitesh
RSS feed on bioconductor.org/developers/gitlog
Mike Smith
Changes to rhdf5
Thursday, January 4, 2018 2 emails
Wednesday, January 3, 2018 7 emails
Kevin Horan
git help
Turaga, Nitesh
git help
Kevin Horan
git help
Hoffman, Gabriel
Issue with dependencies on Windows (tokay2)
Turaga, Nitesh
RSS feed on bioconductor.org/developers/gitlog
Lluís Revilla
RSS feed on bioconductor.org/developers/gitlog
Mike Smith
mzR build failure on Windows: missing HDF5 libraries
Tuesday, January 2, 2018 5 emails
Obenchain, Valerie
RSS feed on bioconductor.org/developers/gitlog
Turaga, Nitesh
RSS feed on bioconductor.org/developers/gitlog
Martin Morgan
mzR build failure on Windows: missing HDF5 libraries
Neumann, Steffen
mzR build failure on Windows: missing HDF5 libraries
Sean Davis
New NSF funding opportunity: Rules of Life (RoL): Forecasting and Emergence in Living Systems