Bioc-devel - April 2018 - Subject View

" Error in serialize(data, node$con, xdr = FALSE)" during Vignette build (ChIC)

3 msgs · Apr 16 – Apr 24

Carmen M. Livi " Error in serialize(data, node$con, xdr = FALSE)" during Vignette build (ChIC) Apr 16, 2018 Obenchain, Valerie " Error in serialize(data, node$con, xdr = FALSE)" during Vignette build (ChIC) Apr 24, 2018 Obenchain, Valerie " Error in serialize(data, node$con, xdr = FALSE)" during Vignette build (ChIC) Apr 24, 2018

"TissueEnrich" is missing in the BioC 3.7 build report

3 msgs · Apr 15 – Apr 15

Ashish Jain "TissueEnrich" is missing in the BioC 3.7 build report Apr 15, 2018 Martin Morgan "TissueEnrich" is missing in the BioC 3.7 build report Apr 15, 2018 Ashish Jain "TissueEnrich" is missing in the BioC 3.7 build report Apr 15, 2018

"convert" graphics error for new submission

4 msgs · Apr 2 – Apr 5

Vincent Carey "convert" graphics error for new submission Apr 2, 2018 Martin Morgan "convert" graphics error for new submission Apr 5, 2018 Vincent Carey "convert" graphics error for new submission Apr 5, 2018 Vincent Carey "convert" graphics error for new submission Apr 5, 2018

AAString - Amino acid code enforced?

2 msgs · Apr 2 – Apr 13

Felix Ernst AAString - Amino acid code enforced? Apr 2, 2018 Hervé Pagès AAString - Amino acid code enforced? Apr 13, 2018

Accessing package citation info programmatically without running R?

1 msg · Apr 17

Ryan Accessing package citation info programmatically without running R? Apr 17, 2018

Big Changes for RCy3 v2.0.0

1 msg · Apr 5

Alex Pico Big Changes for RCy3 v2.0.0 Apr 5, 2018

BioC 3.7 Windows check warning "file link zz in package yy does not exist "

18 msgs · Apr 6 – Apr 26

BioC 3.7: build failing on Mac (merida2) because Cairo not available

3 msgs · Apr 4 – Apr 5

Ramon Diaz-Uriarte BioC 3.7: build failing on Mac (merida2) because Cairo not available Apr 4, 2018 Shepherd, Lori BioC 3.7: build failing on Mac (merida2) because Cairo not available Apr 5, 2018 Ramon Diaz-Uriarte BioC 3.7: build failing on Mac (merida2) because Cairo not available Apr 5, 2018

Bioc 3.7 build failed for GenvisR package

3 msgs · Apr 6 – Apr 24

Zach Skidmore Bioc 3.7 build failed for GenvisR package Apr 6, 2018 Obenchain, Valerie Bioc 3.7 build failed for GenvisR package Apr 20, 2018 Obenchain, Valerie Bioc 3.7 build failed for GenvisR package Apr 24, 2018

Bioc-devel changes and SummarizedExperiment class

3 msgs · Apr 4 – Apr 11

Leonard Goldstein Bioc-devel changes and SummarizedExperiment class Apr 4, 2018 Hervé Pagès Bioc-devel changes and SummarizedExperiment class Apr 10, 2018 Leonard Goldstein Bioc-devel changes and SummarizedExperiment class Apr 11, 2018

BiocCheck error

3 msgs · Apr 10 – Apr 11

Aimin Yan BiocCheck error Apr 10, 2018 Martin Morgan BiocCheck error Apr 10, 2018 Aimin Yan BiocCheck error Apr 11, 2018

BiocGenerics::unique Bug? Error: node stack overflow

1 msg · Apr 2

Zheng Wei BiocGenerics::unique Bug? Error: node stack overflow Apr 2, 2018

BiocGenerics::unique Bug? "Error: node stack overflow" in package esATAC

1 msg · Apr 2

Zheng Wei BiocGenerics::unique Bug? "Error: node stack overflow" in package esATAC Apr 2, 2018

Bioconductor 3.7 annotation deadlines

1 msg · Apr 3

Van Twisk, Daniel Bioconductor 3.7 annotation deadlines Apr 3, 2018

Bioconductor 3.7 release candidate

1 msg · Apr 25

Valerie Obenchain Bioconductor 3.7 release candidate Apr 25, 2018

Bioconductor 3.7 release: 3.7 branch created

1 msg · Apr 30

Obenchain, Valerie Bioconductor 3.7 release: 3.7 branch created Apr 30, 2018

Bioconductor 3.7 release: 3.7 branch created

1 msg · Apr 30

Leonardo Collado Torres Bioconductor 3.7 release: 3.7 branch created Apr 30, 2018

Bioconductor 3.7 release: stop pushes to master

1 msg · Apr 30

Obenchain, Valerie Bioconductor 3.7 release: stop pushes to master Apr 30, 2018

Bioconductor 3.7 release: update NEWS

1 msg · Apr 10

Obenchain, Valerie Bioconductor 3.7 release: update NEWS Apr 10, 2018

Bioconductor Git Access: GateFinder

5 msgs · Apr 13 – Apr 13

Tony Culos Bioconductor Git Access: GateFinder Apr 13, 2018 Turaga, Nitesh Bioconductor Git Access: GateFinder Apr 13, 2018 Turaga, Nitesh Bioconductor Git Access: GateFinder Apr 13, 2018 Turaga, Nitesh Bioconductor Git Access: GateFinder Apr 13, 2018 Turaga, Nitesh Bioconductor Git Access: GateFinder Apr 13, 2018

Bioconductor New Package Submission Deadline Today!

1 msg · Apr 2

Shepherd, Lori Bioconductor New Package Submission Deadline Today! Apr 2, 2018

Build Error processing vignette

2 msgs · Apr 27 – Apr 27

Kucukural, Alper Build Error processing vignette Apr 27, 2018 Shepherd, Lori Build Error processing vignette Apr 27, 2018

Can not push to bioconductor! please help me!

5 msgs · Apr 16 – Apr 18

Zhu MF Can not push to bioconductor! please help me! Apr 16, 2018 Turaga, Nitesh Can not push to bioconductor! please help me! Apr 16, 2018 Shepherd, Lori Can not push to bioconductor! please help me! Apr 16, 2018 Zhu MF Can not push to bioconductor! please help me! Apr 17, 2018 Shepherd, Lori Can not push to bioconductor! please help me! Apr 18, 2018

CfH: mzR 2.13.5 on macOS duplicated symbols from HDF5

1 msg · Apr 3

Neumann, Steffen CfH: mzR 2.13.5 on macOS duplicated symbols from HDF5 Apr 3, 2018

DEADLINE: commits to Bioc 3.7

1 msg · Apr 27

Shepherd, Lori DEADLINE: commits to Bioc 3.7 Apr 27, 2018

DMRcaller build error

5 msgs · Apr 20 – Apr 27

Radu Zabet DMRcaller build error Apr 20, 2018 Hervé Pagès DMRcaller build error Apr 27, 2018 Radu Zabet DMRcaller build error Apr 27, 2018 Hervé Pagès DMRcaller build error Apr 27, 2018 Radu Zabet DMRcaller build error Apr 27, 2018

Deadline for All Package Maintainers

4 msgs · Apr 23 – Apr 23

Shepherd, Lori Deadline for All Package Maintainers Apr 23, 2018 Joris Meys Deadline for All Package Maintainers Apr 23, 2018 Shepherd, Lori Deadline for All Package Maintainers Apr 23, 2018 Shepherd, Lori Deadline for All Package Maintainers Apr 23, 2018

EXTERNAL: build_vignette

1 msg · Apr 16

Marcel Ramos EXTERNAL: build_vignette Apr 16, 2018

EXTERNAL: Accessing package citation info programmatically without running R?

3 msgs · Apr 17 – Apr 17

Marcel Ramos EXTERNAL: Accessing package citation info programmatically without running R? Apr 17, 2018 Ryan EXTERNAL: Accessing package citation info programmatically without running R? Apr 17, 2018 Ryan EXTERNAL: Accessing package citation info programmatically without running R? Apr 17, 2018

EXTERNAL: Fwd: [Bioconductor/Contributions] GIGSEA (#720)

1 msg · Apr 19

Marcel Ramos EXTERNAL: Fwd: [Bioconductor/Contributions] GIGSEA (#720) Apr 19, 2018

Error: node stack overflow

10 msgs · Apr 2 – Apr 30

Errors on DAPAR and Prostar packages ??

3 msgs · Apr 26 – Apr 26

Samuel Wieczorek Errors on DAPAR and Prostar packages ?? Apr 26, 2018 Shepherd, Lori Errors on DAPAR and Prostar packages ?? Apr 26, 2018 Shepherd, Lori Errors on DAPAR and Prostar packages ?? Apr 26, 2018

Failing package merhr

1 msg · Apr 24

Turaga, Nitesh Failing package merhr Apr 24, 2018

Final List of Deprecated Packages for Bioc3.7

1 msg · Apr 2

Shepherd, Lori Final List of Deprecated Packages for Bioc3.7 Apr 2, 2018

GIGSEA (#720)

4 msgs · Apr 17 – Apr 18

Shijia Zhu GIGSEA (#720) Apr 17, 2018 Carmen M. Livi GIGSEA (#720) Apr 17, 2018 Mike Smith GIGSEA (#720) Apr 17, 2018 Shijia Zhu GIGSEA (#720) Apr 18, 2018

GateFinder Write Permission

1 msg · Apr 13

Tony Culos GateFinder Write Permission Apr 13, 2018

GateFinder: Windows Server Error

4 msgs · Apr 17 – Apr 19

Tony Culos GateFinder: Windows Server Error Apr 17, 2018 Shepherd, Lori GateFinder: Windows Server Error Apr 18, 2018 Tony Culos GateFinder: Windows Server Error Apr 18, 2018 Shepherd, Lori GateFinder: Windows Server Error Apr 19, 2018

How to update R version in terminal?

2 msgs · Apr 27 – Apr 27

Yuande Tan How to update R version in terminal? Apr 27, 2018 Hervé Pagès How to update R version in terminal? Apr 27, 2018

I could't push My package GMRP to github/master

2 msgs · Apr 23 – Apr 24

Turaga, Nitesh I could't push My package GMRP to github/master Apr 23, 2018 Shepherd, Lori I could't push My package GMRP to github/master Apr 24, 2018

Including data for @examples to run

2 msgs · Apr 25 – Apr 26

Adam Price Including data for @examples to run Apr 25, 2018 Pariksheet Nanda Including data for @examples to run Apr 26, 2018

Last minute error in the build

4 msgs · Apr 30 – Apr 30

Kangeyan, Divy Last minute error in the build Apr 30, 2018 Shepherd, Lori Last minute error in the build Apr 30, 2018 Hervé Pagès Last minute error in the build Apr 30, 2018 Hervé Pagès Last minute error in the build Apr 30, 2018

Mac builds in devel

1 msg · Apr 10

Obenchain, Valerie Mac builds in devel Apr 10, 2018

Matrix::(cBind|rBind) to base::(cbind|rbind)

1 msg · Apr 2

Turaga, Nitesh Matrix::(cBind|rBind) to base::(cbind|rbind) Apr 2, 2018

Missed deadline

8 msgs · Apr 3 – Apr 4

Kenneth Condon Missed deadline Apr 3, 2018 Shepherd, Lori Missed deadline Apr 3, 2018 Levi Waldron Missed deadline Apr 3, 2018 Gabriel Becker Missed deadline Apr 3, 2018 Levi Waldron Missed deadline Apr 3, 2018 Kenneth Condon Missed deadline Apr 4, 2018 Kasper Daniel Hansen Missed deadline Apr 4, 2018 Gabriel Becker Missed deadline Apr 4, 2018

Need some help to submit a R package.

17 msgs · Apr 1 – Apr 27

New db0 annotation packages

1 msg · Apr 10

Van Twisk, Daniel New db0 annotation packages Apr 10, 2018

No Mac builds for 3.7 today

1 msg · Apr 26

Obenchain, Valerie No Mac builds for 3.7 today Apr 26, 2018

No Windows binary for GenomicRanges

1 msg · Mar 31

Gordon K Smyth No Windows binary for GenomicRanges Mar 31, 2018

Permission denied to Bioconductor repository

2 msgs · Apr 6 – Apr 8

Gabriela Merino Permission denied to Bioconductor repository Apr 6, 2018 Obenchain, Valerie Permission denied to Bioconductor repository Apr 8, 2018

Problem getting updated checkResults

4 msgs · Apr 2 – Apr 2

Lorena Pantano Problem getting updated checkResults Apr 2, 2018 Obenchain, Valerie Problem getting updated checkResults Apr 2, 2018 Lorena Pantano Problem getting updated checkResults Apr 2, 2018 Obenchain, Valerie Problem getting updated checkResults Apr 2, 2018

Problem with saveHDF5SummarizedExperiment in HDF5Array package

4 msgs · Apr 17 – Apr 17

Elizabeth Purdom Problem with saveHDF5SummarizedExperiment in HDF5Array package Apr 17, 2018 Peter Hickey Problem with saveHDF5SummarizedExperiment in HDF5Array package Apr 17, 2018 Martin Morgan Problem with saveHDF5SummarizedExperiment in HDF5Array package Apr 17, 2018 Elizabeth Purdom Problem with saveHDF5SummarizedExperiment in HDF5Array package Apr 17, 2018

Process to rename a bioconductor package

6 msgs · Apr 19 – Apr 26

Adrian Altenhoff Process to rename a bioconductor package Apr 19, 2018 Shepherd, Lori Process to rename a bioconductor package Apr 23, 2018 Shepherd, Lori Process to rename a bioconductor package Apr 25, 2018 Adrian Altenhoff Process to rename a bioconductor package Apr 26, 2018 Turaga, Nitesh Process to rename a bioconductor package Apr 26, 2018 Adrian Altenhoff Process to rename a bioconductor package Apr 26, 2018

Prostar problems reported in the Multiple platform build/check report for BioC 3.7

2 msgs · Apr 27 – Apr 27

Samuel Wieczorek Prostar problems reported in the Multiple platform build/check report for BioC 3.7 Apr 27, 2018 Shepherd, Lori Prostar problems reported in the Multiple platform build/check report for BioC 3.7 Apr 27, 2018

RELEASE_3_6 branch frozen at 3:00pm EST today

1 msg · Apr 11

Turaga, Nitesh RELEASE_3_6 branch frozen at 3:00pm EST today Apr 11, 2018

RELEASE_3_6 branch frozen at 3:00pm EST tomorrow

1 msg · Apr 10

Turaga, Nitesh RELEASE_3_6 branch frozen at 3:00pm EST tomorrow Apr 10, 2018

RareVariantVis failed

9 msgs · Apr 3 – Apr 17

Tomasz Stokowy RareVariantVis failed Apr 3, 2018 Robert Castelo RareVariantVis failed Apr 3, 2018 Tomasz Stokowy RareVariantVis failed Apr 15, 2018 Tomasz Stokowy RareVariantVis failed Apr 17, 2018 Shepherd, Lori RareVariantVis failed Apr 17, 2018 Tomasz Stokowy RareVariantVis failed Apr 17, 2018 Shepherd, Lori RareVariantVis failed Apr 17, 2018 Tomasz Stokowy RareVariantVis failed Apr 17, 2018 Shepherd, Lori RareVariantVis failed Apr 17, 2018

Release Deadline: Passing R CMD build and R CMD check

1 msg · Apr 2

Shepherd, Lori Release Deadline: Passing R CMD build and R CMD check Apr 2, 2018

Release of R package

2 msgs · Apr 2 – Apr 3

Watson Zhang Release of R package Apr 2, 2018 Mike Smith Release of R package Apr 3, 2018

Remove from email list

2 msgs · Apr 24 – Apr 24

Sara Linker Remove from email list Apr 24, 2018 Obenchain, Valerie Remove from email list Apr 24, 2018

Setup for pushing changes in unifiedWMWqPCR to bioconductor git.

2 msgs · Apr 12 – Apr 12

Joris Meys Setup for pushing changes in unifiedWMWqPCR to bioconductor git. Apr 12, 2018 Obenchain, Valerie Setup for pushing changes in unifiedWMWqPCR to bioconductor git. Apr 12, 2018

Subsetting Multiple platform build/check report

5 msgs · Apr 19 – Apr 20

Neumann, Steffen Subsetting Multiple platform build/check report Apr 19, 2018 Martin Morgan Subsetting Multiple platform build/check report Apr 19, 2018 Kasper Daniel Hansen Subsetting Multiple platform build/check report Apr 20, 2018 Mike Smith Subsetting Multiple platform build/check report Apr 20, 2018 Sean Davis Subsetting Multiple platform build/check report Apr 20, 2018

Switch to SSH protocol for git clone instructions on package landing pages?

5 msgs · Apr 29 – Apr 30

Peter Hickey Switch to SSH protocol for git clone instructions on package landing pages? Apr 29, 2018 Joris Meys Switch to SSH protocol for git clone instructions on package landing pages? Apr 29, 2018 Turaga, Nitesh Switch to SSH protocol for git clone instructions on package landing pages? Apr 29, 2018 Peter Hickey Switch to SSH protocol for git clone instructions on package landing pages? Apr 29, 2018 Kasper Daniel Hansen Switch to SSH protocol for git clone instructions on package landing pages? Apr 30, 2018

TIMEOUT on package MEAL

4 msgs · Apr 13 – Apr 20

Carlos Ruiz TIMEOUT on package MEAL Apr 13, 2018 Shepherd, Lori TIMEOUT on package MEAL Apr 13, 2018 Carlos Ruiz TIMEOUT on package MEAL Apr 20, 2018 Shepherd, Lori TIMEOUT on package MEAL Apr 20, 2018

Tensorflow support for bioconductor packages

1 msg · Apr 4

Kieran Campbell Tensorflow support for bioconductor packages Apr 4, 2018

The following bioconductor packages have duplicate commits

1 msg · Apr 30

Turaga, Nitesh The following bioconductor packages have duplicate commits Apr 30, 2018

Transition from Google Sheet to Web App

9 msgs · Apr 17 – Apr 20

TxDbs, OrgDbs, GO.db, and PFAM.db packages available

1 msg · Apr 17

Van Twisk, Daniel TxDbs, OrgDbs, GO.db, and PFAM.db packages available Apr 17, 2018

Unable to access repository

4 msgs · Apr 10 – Apr 11

Clare Pacini Unable to access repository Apr 10, 2018 Turaga, Nitesh Unable to access repository Apr 11, 2018 Clare Pacini Unable to access repository Apr 11, 2018 Turaga, Nitesh Unable to access repository Apr 11, 2018

Unable to push to origin master

4 msgs · Apr 16 – Apr 23

Giorgio Melloni Unable to push to origin master Apr 16, 2018 Turaga, Nitesh Unable to push to origin master Apr 23, 2018 Giorgio Melloni Unable to push to origin master Apr 23, 2018 Turaga, Nitesh Unable to push to origin master Apr 23, 2018

Update data in data package, pcxnData

3 msgs · Apr 5 – Apr 10

Sokratis Kariotis Update data in data package, pcxnData Apr 5, 2018 Shepherd, Lori Update data in data package, pcxnData Apr 5, 2018 Sokratis Kariotis Update data in data package, pcxnData Apr 10, 2018

Update of miRBaseVersions.db annotation package

5 msgs · Apr 5 – Apr 10

Stefan Haunsberger Update of miRBaseVersions.db annotation package Apr 5, 2018 Van Twisk, Daniel Update of miRBaseVersions.db annotation package Apr 6, 2018 Stefan Haunsberger Update of miRBaseVersions.db annotation package Apr 7, 2018 Van Twisk, Daniel Update of miRBaseVersions.db annotation package Apr 9, 2018 Stefan Haunsberger Update of miRBaseVersions.db annotation package Apr 10, 2018

Virtual class for `matrix` and `DelayedArray`? (or better strategy for dealing with them both)

11 msgs · Apr 30 – Apr 30

WARNING regarding imporing SummarizedExperiment

4 msgs · Apr 14 – Apr 15

Ruqian Lyu WARNING regarding imporing SummarizedExperiment Apr 14, 2018 Ruqian Lyu WARNING regarding imporing SummarizedExperiment Apr 14, 2018 Martin Morgan WARNING regarding imporing SummarizedExperiment Apr 15, 2018 Ruqian Lyu WARNING regarding imporing SummarizedExperiment Apr 15, 2018

Warnind DaMiRseq

2 msgs · Apr 23 – Apr 23

Mattia Chiesa Warnind DaMiRseq Apr 23, 2018 Shepherd, Lori Warnind DaMiRseq Apr 23, 2018

Web App for SSH keys

4 msgs · Apr 18 – Apr 19

Obenchain, Valerie Web App for SSH keys Apr 18, 2018 Leonardo Collado Torres Web App for SSH keys Apr 19, 2018 Obenchain, Valerie Web App for SSH keys Apr 19, 2018 Leonardo Collado Torres Web App for SSH keys Apr 19, 2018

Why my package has not been uploaded on bioc devel build list?

2 msgs · Apr 4 – Apr 5

Minoo Ashtiani Why my package has not been uploaded on bioc devel build list? Apr 4, 2018 Shepherd, Lori Why my package has not been uploaded on bioc devel build list? Apr 5, 2018

Windows <Problems with Rd links to other packages on Tokay2>

8 msgs · Apr 16 – Apr 17

Workflow Package Updates / Guidelines

1 msg · Apr 13

Shepherd, Lori Workflow Package Updates / Guidelines Apr 13, 2018

Workflow package landing pages

1 msg · Apr 3

Shepherd, Lori Workflow package landing pages Apr 3, 2018

Workflows are now in git (and other Important workflow-related changes)

6 msgs · Apr 1 – Apr 13

Aaron Lun Workflows are now in git (and other Important workflow-related changes) Apr 1, 2018 Shepherd, Lori Workflows are now in git (and other Important workflow-related changes) Apr 2, 2018 Leonardo Collado Torres Workflows are now in git (and other Important workflow-related changes) Apr 2, 2018 Andrzej Oleś Workflows are now in git (and other Important workflow-related changes) Apr 3, 2018 Aaron Lun Workflows are now in git (and other Important workflow-related changes) Apr 3, 2018 Leonardo Collado Torres Workflows are now in git (and other Important workflow-related changes) Apr 13, 2018

biomaRt uswest mirror ERROR

3 msgs · Apr 24 – Apr 24

Shepherd, Lori biomaRt uswest mirror ERROR Apr 24, 2018 Mike Smith biomaRt uswest mirror ERROR Apr 24, 2018 Shepherd, Lori biomaRt uswest mirror ERROR Apr 24, 2018

bplapply - memory issue

1 msg · Apr 27

H. Paul Benton bplapply - memory issue Apr 27, 2018

bsseqData

9 msgs · Apr 28 – Apr 29

Kasper Daniel Hansen bsseqData Apr 28, 2018 Obenchain, Valerie bsseqData Apr 28, 2018 Peter Hickey bsseqData Apr 29, 2018 Turaga, Nitesh bsseqData Apr 29, 2018 Peter Hickey bsseqData Apr 29, 2018 Turaga, Nitesh bsseqData Apr 29, 2018 Peter Hickey bsseqData Apr 29, 2018 Obenchain, Valerie bsseqData Apr 29, 2018 Peter Hickey bsseqData Apr 29, 2018

build errors

4 msgs · Apr 19 – Apr 20

Karl Stamm build errors Apr 19, 2018 Obenchain, Valerie build errors Apr 19, 2018 Obenchain, Valerie build errors Apr 20, 2018 Obenchain, Valerie build errors Apr 20, 2018

build machines

7 msgs · Apr 26 – Apr 27

Kasper Daniel Hansen build machines Apr 26, 2018 Diogo FT Veiga build machines Apr 26, 2018 Hervé Pagès build machines Apr 26, 2018 Kasper Daniel Hansen build machines Apr 27, 2018 Ludwig Geistlinger build machines Apr 27, 2018 Martin Morgan build machines Apr 27, 2018 Hervé Pagès build machines Apr 27, 2018

build_vignette

1 msg · Apr 11

Kenneth Condon build_vignette Apr 11, 2018

commit not appearing in report

2 msgs · Apr 13 – Apr 13

Nicolas Descostes commit not appearing in report Apr 13, 2018 Shepherd, Lori commit not appearing in report Apr 13, 2018

dbApply name collision, RMySQL and RPostgreSQL, no direct call to either

3 msgs · Apr 23 – Apr 25

Paul Shannon dbApply name collision, RMySQL and RPostgreSQL, no direct call to either Apr 23, 2018 Hervé Pagès dbApply name collision, RMySQL and RPostgreSQL, no direct call to either Apr 23, 2018 Paul Shannon dbApply name collision, RMySQL and RPostgreSQL, no direct call to either Apr 25, 2018

deleting irrelevant legacy objects from git repo?

5 msgs · Apr 22 – Apr 24

Alex Pico deleting irrelevant legacy objects from git repo? Apr 22, 2018 Turaga, Nitesh deleting irrelevant legacy objects from git repo? Apr 24, 2018 Alex Pico deleting irrelevant legacy objects from git repo? Apr 24, 2018 Turaga, Nitesh deleting irrelevant legacy objects from git repo? Apr 24, 2018 Alex Pico deleting irrelevant legacy objects from git repo? Apr 24, 2018

ensembl 92 gtfs and fasta twobits have been added to AnnotationHub

1 msg · Apr 19

Shepherd, Lori ensembl 92 gtfs and fasta twobits have been added to AnnotationHub Apr 19, 2018

git push confusion

8 msgs · Apr 23 – Apr 24

Karl Stamm git push confusion Apr 23, 2018 Turaga, Nitesh git push confusion Apr 23, 2018 Karl Stamm git push confusion Apr 23, 2018 Turaga, Nitesh git push confusion Apr 23, 2018 Karl Stamm git push confusion Apr 23, 2018 Turaga, Nitesh git push confusion Apr 23, 2018 Hervé Pagès git push confusion Apr 23, 2018 Karl Stamm git push confusion Apr 24, 2018

iGraph depending packages failing on Windows build machines

3 msgs · Apr 10 – Apr 12

petr smirnov iGraph depending packages failing on Windows build machines Apr 10, 2018 Obenchain, Valerie iGraph depending packages failing on Windows build machines Apr 11, 2018 Obenchain, Valerie iGraph depending packages failing on Windows build machines Apr 12, 2018

incompatibility between logo for build et the version and success of compilation

3 msgs · Apr 18 – Apr 18

Martin, Tiphaine incompatibility between logo for build et the version and success of compilation Apr 18, 2018 Shepherd, Lori incompatibility between logo for build et the version and success of compilation Apr 18, 2018 Martin, Tiphaine incompatibility between logo for build et the version and success of compilation Apr 18, 2018

new package IGV needs web browsers on the build machines to pass build & check

5 msgs · Apr 9 – Apr 10

Paul Shannon new package IGV needs web browsers on the build machines to pass build & check Apr 9, 2018 Vincent Carey new package IGV needs web browsers on the build machines to pass build & check Apr 9, 2018 Paul Shannon new package IGV needs web browsers on the build machines to pass build & check Apr 9, 2018 Vincent Carey new package IGV needs web browsers on the build machines to pass build & check Apr 9, 2018 Paul Shannon new package IGV needs web browsers on the build machines to pass build & check Apr 10, 2018

package is not available (for R version 3.4.4)

2 msgs · Apr 11 – Apr 11

Minoo Ashtiani package is not available (for R version 3.4.4) Apr 11, 2018 Shepherd, Lori package is not available (for R version 3.4.4) Apr 11, 2018

package build error probably due to Biomart unavailability

2 msgs · Apr 20 – Apr 20

Blattmann Peter package build error probably due to Biomart unavailability Apr 20, 2018 Shepherd, Lori package build error probably due to Biomart unavailability Apr 20, 2018

problem in rbind with DelayedArray / HDF5Array package

4 msgs · Apr 4 – Apr 4

Elizabeth Purdom problem in rbind with DelayedArray / HDF5Array package Apr 4, 2018 Peter Hickey problem in rbind with DelayedArray / HDF5Array package Apr 4, 2018 Elizabeth Purdom problem in rbind with DelayedArray / HDF5Array package Apr 4, 2018 Michael Lawrence problem in rbind with DelayedArray / HDF5Array package Apr 4, 2018

problem with class definitions between S4Vectors and RNeXML in using Summarized Experiment

14 msgs · Apr 11 – Apr 23

push access to adaptest

2 msgs · Apr 30 – Apr 30

Nima Hejazi push access to adaptest Apr 30, 2018 WILSON CAI push access to adaptest Apr 30, 2018

repository change after package acceptance

4 msgs · Apr 16 – Apr 16

Xu Qiao repository change after package acceptance Apr 16, 2018 Lluís Revilla repository change after package acceptance Apr 16, 2018 Xu Qiao repository change after package acceptance Apr 16, 2018 Shepherd, Lori repository change after package acceptance Apr 16, 2018

right version "masked" by wrong version - not sure what "masked means"

3 msgs · Apr 10 – Apr 13

Paul Shannon right version "masked" by wrong version - not sure what "masked means" Apr 10, 2018 Shepherd, Lori right version "masked" by wrong version - not sure what "masked means" Apr 13, 2018 Paul Shannon right version "masked" by wrong version - not sure what "masked means" Apr 13, 2018

single-package build, from git trigger: new linux build report missing

4 msgs · Apr 10 – Apr 10

Paul Shannon single-package build, from git trigger: new linux build report missing Apr 10, 2018 Paul Shannon single-package build, from git trigger: new linux build report missing Apr 10, 2018 Martin Morgan single-package build, from git trigger: new linux build report missing Apr 10, 2018 Paul Shannon single-package build, from git trigger: new linux build report missing Apr 10, 2018

tokay2 error with httr

2 msgs · Apr 15 – Apr 15

Klara Kaleb tokay2 error with httr Apr 15, 2018 Martin Morgan tokay2 error with httr Apr 15, 2018

update schedule of packages

2 msgs · Apr 11 – Apr 11

Minoo Ashtiani update schedule of packages Apr 11, 2018 Hervé Pagès update schedule of packages Apr 11, 2018

vignette problems

23 msgs · Apr 1 – Apr 24

web browser support missing in the build system? new package, IGV

1 msg · Apr 4

Paul Shannon web browser support missing in the build system? new package, IGV Apr 4, 2018

‘SOCKcluster’ cluster error with bplapply() under merida2

4 msgs · Apr 18 – Apr 18

Carmen M. Livi ‘SOCKcluster’ cluster error with bplapply() under merida2 Apr 18, 2018 Martin Morgan ‘SOCKcluster’ cluster error with bplapply() under merida2 Apr 18, 2018 Carmen M. Livi ‘SOCKcluster’ cluster error with bplapply() under merida2 Apr 18, 2018 Martin Morgan ‘SOCKcluster’ cluster error with bplapply() under merida2 Apr 18, 2018

Bioc-devel April 2018

" Error in serialize(data, node$con, xdr = FALSE)" during Vignette build (ChIC)

"TissueEnrich" is missing in the BioC 3.7 build report

"convert" graphics error for new submission

AAString - Amino acid code enforced?

Accessing package citation info programmatically without running R?

Big Changes for RCy3 v2.0.0

BioC 3.7 Windows check warning "file link zz in package yy does not exist "

BioC 3.7: build failing on Mac (merida2) because Cairo not available

Bioc 3.7 build failed for GenvisR package

Bioc-devel changes and SummarizedExperiment class

BiocCheck error

BiocGenerics::unique Bug? Error: node stack overflow

BiocGenerics::unique Bug? "Error: node stack overflow" in package esATAC

Bioconductor 3.7 annotation deadlines

Bioconductor 3.7 release candidate

Bioconductor 3.7 release: 3.7 branch created

Bioconductor 3.7 release: 3.7 branch created

Bioconductor 3.7 release: stop pushes to master

Bioconductor 3.7 release: update NEWS

Bioconductor Git Access: GateFinder

Bioconductor New Package Submission Deadline Today!

Build Error processing vignette

Can not push to bioconductor! please help me!

CfH: mzR 2.13.5 on macOS duplicated symbols from HDF5

DEADLINE: commits to Bioc 3.7

DMRcaller build error

Deadline for All Package Maintainers

EXTERNAL: build_vignette

EXTERNAL: Accessing package citation info programmatically without running R?

EXTERNAL: Fwd: [Bioconductor/Contributions] GIGSEA (#720)

Error: node stack overflow

Errors on DAPAR and Prostar packages ??

Failing package merhr

Final List of Deprecated Packages for Bioc3.7

GIGSEA (#720)

GateFinder Write Permission

GateFinder: Windows Server Error

How to update R version in terminal?

I could't push My package GMRP to github/master

Including data for @examples to run

Last minute error in the build

Mac builds in devel

Matrix::(cBind|rBind) to base::(cbind|rbind)

Missed deadline

Need some help to submit a R package.

New db0 annotation packages

No Mac builds for 3.7 today

No Windows binary for GenomicRanges

Permission denied to Bioconductor repository

Problem getting updated checkResults

Problem with saveHDF5SummarizedExperiment in HDF5Array package

Process to rename a bioconductor package

Prostar problems reported in the Multiple platform build/check report for BioC 3.7

RELEASE_3_6 branch frozen at 3:00pm EST today

RELEASE_3_6 branch frozen at 3:00pm EST tomorrow

RareVariantVis failed

Release Deadline: Passing R CMD build and R CMD check

Release of R package

Remove from email list

Setup for pushing changes in unifiedWMWqPCR to bioconductor git.

Subsetting Multiple platform build/check report

Suggested edits to support site posting guide

Switch to SSH protocol for git clone instructions on package landing pages?

TIMEOUT on package MEAL

Tensorflow support for bioconductor packages

The following bioconductor packages have duplicate commits

Transition from Google Sheet to Web App

TxDbs, OrgDbs, GO.db, and PFAM.db packages available

Unable to access repository

Unable to push to origin master

Update data in data package, pcxnData

Update of miRBaseVersions.db annotation package

Virtual class for `matrix` and `DelayedArray`? (or better strategy for dealing with them both)

WARNING regarding imporing SummarizedExperiment

Warnind DaMiRseq

Web App for SSH keys

Why my package has not been uploaded on bioc devel build list?

Windows <Problems with Rd links to other packages on Tokay2>

Workflow Package Updates / Guidelines