Bioc-devel - August 2018 - Thread View

[Bioc-devel] BiocManager updates / changes

1 msg Aug 31

Marcel Ramos BiocManager updates / changes Aug 31, 2018

[Bioc-devel] Git failing to push upstream to Bioc devel

3 msgs Aug 31

Koen Van den Berge Git failing to push upstream to Bioc devel Aug 31, 2018

Turaga, Nitesh Git failing to push upstream to Bioc devel Aug 31, 2018

Koen Van den Berge Git failing to push upstream to Bioc devel Aug 31, 2018

[Bioc-devel] No Mac builds Aug 29

3 msgs Aug 31

Obenchain, Valerie No Mac builds Aug 29 Aug 24, 2018

Obenchain, Valerie No Mac builds Aug 29 Aug 29, 2018

Obenchain, Valerie No Mac builds Aug 29 Aug 31, 2018

[Bioc-devel] GitHub and Bioc sync: issue with dup commit for the sva package

3 msgs Aug 30

Leonardo Collado Torres GitHub and Bioc sync: issue with dup commit for the sva package Aug 27, 2018

Claire Ruberman GitHub and Bioc sync: issue with dup commit for the sva package Aug 29, 2018

Turaga, Nitesh GitHub and Bioc sync: issue with dup commit for the sva package Aug 30, 2018

[Bioc-devel] Logolas package broken for R (3.4) users

5 msgs Aug 30

kushal kumar dey Logolas package broken for R (3.4) users Aug 27, 2018

Obenchain, Valerie Logolas package broken for R (3.4) users Aug 28, 2018

Kasper Daniel Hansen Logolas package broken for R (3.4) users Aug 29, 2018

Obenchain, Valerie Logolas package broken for R (3.4) users Aug 29, 2018

kushal kumar dey Logolas package broken for R (3.4) users Aug 30, 2018

[Bioc-devel] Pushing to Bioconductor devel version...

2 msgs Aug 30

Paul Brennan Pushing to Bioconductor devel version... Aug 30, 2018

Shepherd, Lori Pushing to Bioconductor devel version... Aug 30, 2018

[Bioc-devel] Help with class lost after subsetting.

4 msgs Aug 28

Charles Plessy Help with class lost after subsetting. Aug 27, 2018

Martin Morgan Help with class lost after subsetting. Aug 27, 2018

Hervé Pagès Help with class lost after subsetting. Aug 28, 2018

[Bioc-devel] updating development version package

2 msgs Aug 28

zzrickli m@ili@g off gm@il@com updating development version package Aug 28, 2018

Shepherd, Lori updating development version package Aug 28, 2018

[Bioc-devel] Don't have access to new package

2 msgs Aug 28

John Stansfield Don't have access to new package Aug 27, 2018

Obenchain, Valerie Don't have access to new package Aug 28, 2018

[Bioc-devel] The warning about 'biocLite()'

5 msgs Aug 27

r04945002 m@ili@g off @tu@edu@tw The warning about 'biocLite()' Aug 26, 2018

Shepherd, Lori The warning about 'biocLite()' Aug 26, 2018

r04945002 m@ili@g off @tu@edu@tw The warning about 'biocLite()' Aug 27, 2018

Shepherd, Lori The warning about 'biocLite()' Aug 27, 2018

r04945002 m@ili@g off @tu@edu@tw The warning about 'biocLite()' Aug 27, 2018

[Bioc-devel] GitHub and Bioc sync: issue with dup commit for the sva package

1 msg Aug 27

Leonardo Collado Torres GitHub and Bioc sync: issue with dup commit for the sva package Aug 27, 2018

[Bioc-devel] GitHub and Bioc sync: issue with dup commit for the sva package

2 msgs Aug 24

Leonardo Collado Torres GitHub and Bioc sync: issue with dup commit for the sva package Aug 24, 2018

Turaga, Nitesh GitHub and Bioc sync: issue with dup commit for the sva package Aug 24, 2018

[Bioc-devel] MAEndToEnd workflow dropped from the build system?

3 msgs Aug 23

Bernd Klaus MAEndToEnd workflow dropped from the build system? Aug 23, 2018

Shepherd, Lori MAEndToEnd workflow dropped from the build system? Aug 23, 2018

Bernd Klaus MAEndToEnd workflow dropped from the build system? Aug 23, 2018

[Bioc-devel] Major update to rhdf5 and Rhdf5lib

2 msgs Aug 23

Mike Smith Major update to rhdf5 and Rhdf5lib Aug 23, 2018

Peter Hickey Major update to rhdf5 and Rhdf5lib Aug 23, 2018

[Bioc-devel] Git file size limits

3 msgs Aug 22

Mike Smith Git file size limits Aug 22, 2018

Martin Morgan Git file size limits Aug 22, 2018

Mike Smith Git file size limits Aug 22, 2018

[Bioc-devel] Multiple Bioconductor Maintainers?

3 msgs Aug 22

Warden, Charles Multiple Bioconductor Maintainers? Aug 21, 2018

Obenchain, Valerie Multiple Bioconductor Maintainers? Aug 22, 2018

Warden, Charles Multiple Bioconductor Maintainers? Aug 22, 2018

[Bioc-devel] Updates to ExperimentHub and AnnotationHub API

1 msg Aug 21

Shepherd, Lori Updates to ExperimentHub and AnnotationHub API Aug 21, 2018

[Bioc-devel] Experiment Hub Updates

2 msgs Aug 21

Shepherd, Lori Experiment Hub Updates Aug 21, 2018

[Bioc-devel] Question

4 msgs Aug 18

Ghiwa Khalil Question Aug 18, 2018

Vincent Carey Question Aug 18, 2018

Tim Triche, Jr. Question Aug 18, 2018

Michael Lawrence Question Aug 18, 2018

[Bioc-devel] New package submission - how to add a webhook?

3 msgs Aug 17

Kenneth Condon New package submission - how to add a webhook? Aug 17, 2018

Martin Morgan New package submission - how to add a webhook? Aug 17, 2018

Kenneth Condon New package submission - how to add a webhook? Aug 17, 2018

[Bioc-devel] update AnnotationHub and ExperimentHub server

3 msgs Aug 17

Obenchain, Valerie update AnnotationHub and ExperimentHub server Aug 8, 2018

Obenchain, Valerie update AnnotationHub and ExperimentHub server Aug 16, 2018

Obenchain, Valerie update AnnotationHub and ExperimentHub server Aug 17, 2018

[Bioc-devel] troubles with fetching Bioconductor github

7 msgs Aug 17

Piotr troubles with fetching Bioconductor github Aug 2, 2018

Turaga, Nitesh EXTERNAL: troubles with fetching Bioconductor github Aug 2, 2018

Piotr EXTERNAL: troubles with fetching Bioconductor github Aug 2, 2018

Turaga, Nitesh EXTERNAL: troubles with fetching Bioconductor github Aug 2, 2018

Piotr EXTERNAL: troubles with fetching Bioconductor github Aug 3, 2018

Turaga, Nitesh EXTERNAL: troubles with fetching Bioconductor github Aug 3, 2018

Felix Ernst EXTERNAL: troubles with fetching Bioconductor github Aug 17, 2018

[Bioc-devel] Block bootstrap for GenomicRanges

9 msgs Aug 14

Michael Love Block bootstrap for GenomicRanges Aug 13, 2018

Hervé Pagès Block bootstrap for GenomicRanges Aug 13, 2018

Michael Love Block bootstrap for GenomicRanges Aug 13, 2018

Hervé Pagès Block bootstrap for GenomicRanges Aug 13, 2018

Michael Love Block bootstrap for GenomicRanges Aug 14, 2018

Kasper Daniel Hansen Block bootstrap for GenomicRanges Aug 14, 2018

Michael Love Block bootstrap for GenomicRanges Aug 14, 2018

Bernat Gel Block bootstrap for GenomicRanges Aug 14, 2018

Hervé Pagès Block bootstrap for GenomicRanges Aug 14, 2018

[Bioc-devel] tokay2 internet connectivity

1 msg Aug 13

Obenchain, Valerie tokay2 internet connectivity Aug 13, 2018

[Bioc-devel] Single Package Builder Updates

2 msgs Aug 13

Shepherd, Lori Single Package Builder Updates Aug 13, 2018

Shepherd, Lori EXTERNAL: Single Package Builder Updates Aug 13, 2018

[Bioc-devel] Question

2 msgs Aug 13

Ghiwa Khalil Question Aug 13, 2018

Shepherd, Lori Question Aug 13, 2018

[Bioc-devel] sessionInfo() breaks the 5000-character limit on support.bioconductor.org

3 msgs Aug 12

Tim Triche, Jr. sessionInfo() breaks the 5000-character limit on support.bioconductor.org Aug 12, 2018

Obenchain, Valerie EXTERNAL: sessionInfo() breaks the 5000-character limit on support.bioconductor.org Aug 12, 2018

[Bioc-devel] Password Reset Help

4 msgs Aug 9

Augustin Luna Password Reset Help Aug 7, 2018

Obenchain, Valerie EXTERNAL: Password Reset Help Aug 8, 2018

Augustin Luna EXTERNAL: Password Reset Help Aug 9, 2018

Obenchain, Valerie EXTERNAL: Password Reset Help Aug 9, 2018

[Bioc-devel] EXTERNAL: Adding one more maintainer - Mergeomicspackage

1 msg Aug 7

Wenting Liu EXTERNAL: Adding one more maintainer - Mergeomicspackage Aug 7, 2018

[Bioc-devel] EXTERNAL: Re: Is biocLite() working for you right now? Could be a problem on our side. Issue with DelayedArray install with a PC on R 3.5.0

1 msg Aug 7

Leonardo Collado Torres EXTERNAL: Re: Is biocLite() working for you right now? Could be a problem on our side. Issue with DelayedArray install with a PC on R 3.5.0 Aug 7, 2018

[Bioc-devel] Fwd: PREDA problems reported in the Multiple platform build/check report for BioC 3.7

3 msgs Aug 6

Francesco Ferrari PREDA problems reported in the Multiple platform build/check report for BioC 3.7 Aug 6, 2018

Shepherd, Lori EXTERNAL: Fwd: PREDA problems reported in the Multiple platform build/check report for BioC 3.7 Aug 6, 2018

Dario Strbenac EXTERNAL: Fwd: PREDA problems reported in the Multiple platform build/check report for BioC 3.7 Aug 6, 2018

[Bioc-devel] RSA key format

4 msgs Aug 6

J@J@Goem@@ m@ili@g off lumc@@l RSA key format Aug 6, 2018

Obenchain, Valerie EXTERNAL: RSA key format Aug 6, 2018

J@J@Goem@@ m@ili@g off lumc@@l EXTERNAL: RSA key format Aug 6, 2018

Obenchain, Valerie EXTERNAL: RSA key format Aug 6, 2018

[Bioc-devel] EXTERNAL: introducing BiocManager in devel packagepages?

2 msgs Aug 6

Anamaria Elek EXTERNAL: introducing BiocManager in devel packagepages? Aug 5, 2018

Martin Morgan EXTERNAL: introducing BiocManager in devel packagepages? Aug 6, 2018

[Bioc-devel] EXTERNAL: Updating SSH keys without previous email account

2 msgs Aug 6

Turaga, Nitesh EXTERNAL: Updating SSH keys without previous email account Aug 3, 2018

Anthony Chiu EXTERNAL: Updating SSH keys without previous email account Aug 6, 2018

[Bioc-devel] Updating SSH keys without previous email account

2 msgs Aug 5

Anthony Chiu Updating SSH keys without previous email account Aug 2, 2018

Obenchain, Valerie EXTERNAL: Updating SSH keys without previous email account Aug 5, 2018

[Bioc-devel] Special meta column name in GRanges cause invalid object

1 msg Aug 4

Hervé Pagès Special meta column name in GRanges cause invalid object Aug 4, 2018

[Bioc-devel] SQLForge Question about creating a new species package for Chlamydomonas reinhardtii

2 msgs Aug 3

Bijie Ren SQLForge Question about creating a new species package for Chlamydomonas reinhardtii Aug 1, 2018

Shepherd, Lori EXTERNAL: SQLForge Question about creating a new species package for Chlamydomonas reinhardtii Aug 3, 2018

[Bioc-devel] List of Deprecated Packages for Bioc3.8

1 msg Aug 3

Shepherd, Lori List of Deprecated Packages for Bioc3.8 Aug 3, 2018

[Bioc-devel] Question about package development

3 msgs Aug 3

Ghiwa Khalil Question about package development Aug 3, 2018

Shepherd, Lori Question about package development Aug 3, 2018

Vincent Carey Question about package development Aug 3, 2018

[Bioc-devel] Is biocLite() working for you right now? Could be a problem on our side. Issue with DelayedArray install with a PC on R 3.5.0

3 msgs Aug 3

Leonardo Collado Torres Is biocLite() working for you right now? Could be a problem on our side. Issue with DelayedArray install with a PC on R 3.5.0 Aug 1, 2018

Hervé Pagès Is biocLite() working for you right now? Could be a problem on our side. Issue with DelayedArray install with a PC on R 3.5.0 Aug 2, 2018

Martin Morgan EXTERNAL: Re: Is biocLite() working for you right now? Could be a problem on our side. Issue with DelayedArray install with a PC on R 3.5.0 Aug 3, 2018

[Bioc-devel] Is biocLite() working for you right now? Could be a problem on our side. Issue with DelayedArray install with a PC on R 3.5.0

1 msg Aug 2

Leonardo Collado Torres Is biocLite() working for you right now? Could be a problem on our side. Issue with DelayedArray install with a PC on R 3.5.0 Aug 2, 2018

[Bioc-devel] ensembl 93 gtf and twobits added to AnnotationHub

1 msg Aug 1

Shepherd, Lori ensembl 93 gtf and twobits added to AnnotationHub Aug 1, 2018

Bioc-devel August 2018