Bioc-devel October 2018

[Bioc-devel] Activating account

4 msgs Oct 31

M

Martin Morgan Activating account Oct 31, 2018

L

Lan Huong Nguyen Activating account Oct 31, 2018

M

Martin Morgan Activating account Oct 31, 2018

L

Lan Huong Nguyen Activating account Oct 31, 2018

[Bioc-devel] Fwd: Activating account

1 msg Oct 31

L

Lan Huong Nguyen Activating account Oct 31, 2018

[Bioc-devel] Activating account

2 msgs Oct 31

L

Lan Huong Nguyen Activating account Oct 31, 2018

M

Martin Morgan Activating account Oct 31, 2018

[Bioc-devel] Bioconductor 3.8 is released

1 msg Oct 31

O

Obenchain, Valerie Bioconductor 3.8 is released Oct 31, 2018

[Bioc-devel] query regarding bfg on bioconductor repository

1 msg Oct 31

T

Turaga, Nitesh query regarding bfg on bioconductor repository Oct 31, 2018

[Bioc-devel] Bioconductor 3.8 branch created

1 msg Oct 30

O

Obenchain, Valerie Bioconductor 3.8 branch created Oct 30, 2018

[Bioc-devel] Bioconductor 3.8 branching today

1 msg Oct 30

O

Obenchain, Valerie Bioconductor 3.8 branching today Oct 30, 2018

[Bioc-devel] Need update access agaisnt package 'banocc'

11 msgs Oct 30

G

George Weingart Need update access agaisnt package 'banocc' Oct 17, 2018

O

Obenchain, Valerie Need update access agaisnt package 'banocc' Oct 17, 2018

G

George Weingart Need update access agaisnt package 'banocc' Oct 17, 2018

T

Turaga, Nitesh Need update access agaisnt package 'banocc' Oct 17, 2018

T

Turaga, Nitesh Need update access agaisnt package 'banocc' Oct 18, 2018

G

George Weingart Need update access agaisnt package 'banocc' Oct 18, 2018

T

Turaga, Nitesh Need update access agaisnt package 'banocc' Oct 18, 2018

G

George Weingart Need update access agaisnt package 'banocc' Oct 19, 2018

D

Dario Strbenac Need update access agaisnt package 'banocc' Oct 20, 2018

G

George Weingart Need update access agaisnt package 'banocc' Oct 29, 2018

S

Shepherd, Lori Need update access agaisnt package 'banocc' Oct 30, 2018

[Bioc-devel] Issue with 'configure' not being executable

6 msgs Oct 29

T

Thomas Sherman Issue with 'configure' not being executable Oct 29, 2018

T

Thomas Sherman Issue with 'configure' not being executable Oct 29, 2018

M

Martin Morgan Issue with 'configure' not being executable Oct 29, 2018

T

Thomas Sherman Issue with 'configure' not being executable Oct 29, 2018

M

Martin Morgan Issue with 'configure' not being executable Oct 29, 2018

T

Thomas Sherman Issue with 'configure' not being executable Oct 29, 2018

[Bioc-devel] Creating Bioconductor 3.8 branch on Oct 30

1 msg Oct 29

O

Obenchain, Valerie Creating Bioconductor 3.8 branch on Oct 30 Oct 29, 2018

[Bioc-devel] Last day to update NEWS files

2 msgs Oct 29

S

Shepherd, Lori Last day to update NEWS files Oct 29, 2018

S

Shepherd, Lori Last day to update NEWS files Oct 29, 2018

[Bioc-devel] BioC2019 June 24-27 in New York City

1 msg Oct 26

L

Levi Waldron BioC2019 June 24-27 in New York City Oct 26, 2018

[Bioc-devel] New package: 0.99.x -> 1.0.0 ?

2 msgs Oct 26

A

André Veríssimo New package: 0.99.x -> 1.0.0 ? Oct 26, 2018

S

Shepherd, Lori New package: 0.99.x -> 1.0.0 ? Oct 26, 2018

[Bioc-devel] Changing a name of a package already under review

5 msgs Oct 25

L

Lan Huong Nguyen Changing a name of a package already under review Oct 22, 2018

T

Turaga, Nitesh Changing a name of a package already under review Oct 22, 2018

H

Hervé Pagès Changing a name of a package already under review Oct 22, 2018

S

Shepherd, Lori Changing a name of a package already under review Oct 23, 2018

L

Lan Huong Nguyen Changing a name of a package already under review Oct 25, 2018

[Bioc-devel] Ascona Workshop 2019 -- Statistical Challenges in Medical Data Science, 16–21 June 2019

1 msg Oct 25

W

Wolfgang Huber Ascona Workshop 2019 -- Statistical Challenges in Medical Data Science, 16–21 June 2019 Oct 25, 2018

[Bioc-devel] Error building the vignette

2 msgs Oct 25

L

Lluís Revilla Error building the vignette Oct 25, 2018

M

Martin Morgan Error building the vignette Oct 25, 2018

[Bioc-devel] write.table() of DataFrame introduces \n linebreaks in CSV output

1 msg Oct 24

N

Neumann, Steffen write.table() of DataFrame introduces \n linebreaks in CSV output Oct 24, 2018

[Bioc-devel] Bioc 3.8 feature freeze

1 msg Oct 24

O

Obenchain, Valerie Bioc 3.8 feature freeze Oct 24, 2018

[Bioc-devel] Failing GenVisR package

2 msgs Oct 23

S

Skidmore, Zach Failing GenVisR package Oct 22, 2018

O

Obenchain, Valerie Failing GenVisR package Oct 23, 2018

[Bioc-devel] change the codes in Bio

2 msgs Oct 23

I

Irene Zeng change the codes in Bio Oct 23, 2018

M

Martin Morgan change the codes in Bio Oct 23, 2018

[Bioc-devel] RnBeads 2.0

2 msgs Oct 23

F

Fabian Müller RnBeads 2.0 Oct 23, 2018

H

Hervé Pagès RnBeads 2.0 Oct 23, 2018

[Bioc-devel] Last day to commit changes to devel 3.8 branch and update NEWS file

1 msg Oct 22

S

Shepherd, Lori Last day to commit changes to devel 3.8 branch and update NEWS file Oct 22, 2018

[Bioc-devel] Deadline for Bioconductor packages to pass R CMD build/check

1 msg Oct 22

S

Shepherd, Lori Deadline for Bioconductor packages to pass R CMD build/check Oct 22, 2018

[Bioc-devel] Failed to update release 3_7

2 msgs Oct 20

E

Eugenia Galeota Failed to update release 3_7 Oct 20, 2018

S

Shepherd, Lori Failed to update release 3_7 Oct 20, 2018

[Bioc-devel] How to extend nonstandardGenericFunction

5 msgs Oct 19

E

Elizabeth Purdom How to extend nonstandardGenericFunction Oct 19, 2018

E

Elizabeth Purdom How to extend nonstandardGenericFunction Oct 19, 2018

M

Martin Morgan How to extend nonstandardGenericFunction Oct 19, 2018

E

Elizabeth Purdom How to extend nonstandardGenericFunction Oct 19, 2018

E

Elizabeth Purdom How to extend nonstandardGenericFunction Oct 19, 2018

[Bioc-devel] Bioconductor 3.8 OrgDb and TxDb packages now availiable

1 msg Oct 19

V

Van Twisk, Daniel Bioconductor 3.8 OrgDb and TxDb packages now availiable Oct 19, 2018

[Bioc-devel] Updated db0 packages available

1 msg Oct 19

V

Van Twisk, Daniel Updated db0 packages available Oct 19, 2018

[Bioc-devel] BioC 3.8 build Error

5 msgs Oct 17

M

Martin, Patrick C N BioC 3.8 build Error Oct 17, 2018

S

Shepherd, Lori BioC 3.8 build Error Oct 17, 2018

M

Martin, Patrick C N BioC 3.8 build Error Oct 17, 2018

V

Vincent Carey BioC 3.8 build Error Oct 17, 2018

M

Martin, Patrick C N BioC 3.8 build Error Oct 17, 2018

[Bioc-devel] ensembl 94 gtfs and fasta twobits have been added to AnnotationHub

1 msg Oct 16

S

Shepherd, Lori ensembl 94 gtfs and fasta twobits have been added to AnnotationHub Oct 16, 2018

[Bioc-devel] Bioconductor build still has not completed

4 msgs Oct 16

K

Koustav Pal Bioconductor build still has not completed Oct 16, 2018

S

Shepherd, Lori Bioconductor build still has not completed Oct 16, 2018

K

Koustav Pal Bioconductor build still has not completed Oct 16, 2018

S

Shepherd, Lori Bioconductor build still has not completed Oct 16, 2018

[Bioc-devel] Last build of Bioconductor 3.7

2 msgs Oct 15

O

Obenchain, Valerie Last build of Bioconductor 3.7 Oct 15, 2018

T

Turaga, Nitesh Last build of Bioconductor 3.7 Oct 15, 2018

[Bioc-devel] Bioc 3.8 packages: if/while condition

2 msgs Oct 15

O

Obenchain, Valerie Bioc 3.8 packages: if/while condition Oct 15, 2018

O

Obenchain, Valerie Bioc 3.8 packages: if/while condition Oct 15, 2018

[Bioc-devel] Bioconductor 3.8 db0 annotation packages availiable; new deadline for contributed annotations Oct 22nd

1 msg Oct 14

V

Van Twisk, Daniel Bioconductor 3.8 db0 annotation packages availiable; new deadline for contributed annotations Oct 22nd Oct 14, 2018

[Bioc-devel] how can I declare that a package doesn't/can't fully support Windows

8 msgs Oct 12

T

Tim Triche, Jr. how can I declare that a package doesn't/can't fully support Windows Oct 10, 2018

M

Martin Morgan how can I declare that a package doesn't/can't fully support Windows Oct 10, 2018

H

Hervé Pagès how can I declare that a package doesn't/can't fully support Windows Oct 10, 2018

H

Hervé Pagès how can I declare that a package doesn't/can't fully support Windows Oct 10, 2018

T

Tim Triche, Jr. how can I declare that a package doesn't/can't fully support Windows Oct 11, 2018

H

Hervé Pagès how can I declare that a package doesn't/can't fully support Windows Oct 11, 2018

T

Tim Triche, Jr. how can I declare that a package doesn't/can't fully support Windows Oct 12, 2018

H

Hervé Pagès how can I declare that a package doesn't/can't fully support Windows Oct 12, 2018

[Bioc-devel] Bioconductor package build fails

4 msgs Oct 11

H

Hoffman, Gabriel Bioconductor package build fails Oct 11, 2018

H

Hervé Pagès Bioconductor package build fails Oct 11, 2018

H

Hoffman, Gabriel Bioconductor package build fails Oct 11, 2018

M

Martin Morgan Bioconductor package build fails Oct 11, 2018

[Bioc-devel] Problem with setClassUnion and DelayedArray

4 msgs Oct 11

E

Elizabeth Purdom Problem with setClassUnion and DelayedArray Oct 10, 2018

M

Michael Lawrence Problem with setClassUnion and DelayedArray Oct 10, 2018

H

Hervé Pagès Problem with setClassUnion and DelayedArray Oct 10, 2018

E

Elizabeth Purdom Problem with setClassUnion and DelayedArray Oct 11, 2018

[Bioc-devel] Have trouble in push to master branch

6 msgs Oct 11

J

Jianhong Ou, Ph.D. Have trouble in push to master branch Oct 11, 2018

T

Turaga, Nitesh Have trouble in push to master branch Oct 11, 2018

Z

Zhu, Lihua (Julie) Have trouble in push to master branch Oct 11, 2018

T

Turaga, Nitesh Have trouble in push to master branch Oct 11, 2018

J

Jianhong Ou, Ph.D. Have trouble in push to master branch Oct 11, 2018

Z

Zhu, Lihua (Julie) Have trouble in push to master branch Oct 11, 2018

[Bioc-devel] New Feature: Ability to control pre-receive hooks in a modular way is active

1 msg Oct 11

T

Turaga, Nitesh New Feature: Ability to control pre-receive hooks in a modular way is active Oct 11, 2018

[Bioc-devel] Package simulatorZ timeout under Windows on the release but not the devel branch

2 msgs Oct 11

Y

Yuqing Zhang Package simulatorZ timeout under Windows on the release but not the devel branch Oct 9, 2018

O

Obenchain, Valerie Package simulatorZ timeout under Windows on the release but not the devel branch Oct 11, 2018

[Bioc-devel] Why bioconductor?

6 msgs Oct 11

L

Ludwig Geistlinger Why bioconductor? Oct 10, 2018

L

Levi Waldron Why bioconductor? Oct 10, 2018

T

Turaga, Nitesh Why bioconductor? Oct 10, 2018

L

Levi Waldron Why bioconductor? Oct 10, 2018

M

Martin Morgan Why bioconductor? Oct 10, 2018

L

Lluís Revilla Why bioconductor? Oct 11, 2018

[Bioc-devel] Roxygen documentation under windows

2 msgs Oct 10

L

Leonardo Collado Torres Roxygen documentation under windows Oct 8, 2018

C

Christian Mertes Roxygen documentation under windows Oct 10, 2018

[Bioc-devel] Files in the 'vignettes' directory but no files in 'inst/doc'

2 msgs Oct 10

B

Bohdan Khomtchouk Files in the 'vignettes' directory but no files in 'inst/doc' Oct 10, 2018

M

Martin Morgan Files in the 'vignettes' directory but no files in 'inst/doc' Oct 10, 2018

[Bioc-devel] Invalid Parameter - /figure-html

1 msg Oct 10

O

Obenchain, Valerie Invalid Parameter - /figure-html Oct 10, 2018

[Bioc-devel] FW: Only one week left to apply for the Better Scientific Software Fellowship program!

1 msg Oct 9

D

Davis, Sean (NIH/NCI) [E] Only one week left to apply for the Better Scientific Software Fellowship program! Oct 9, 2018

[Bioc-devel] Invalid Parameter - /figure-html

1 msg Oct 9

O

Obenchain, Valerie Invalid Parameter - /figure-html Oct 9, 2018

[Bioc-devel] avoiding circular dependencies between a Data package and a Software package

8 msgs Oct 9

T

Tim Triche, Jr. avoiding circular dependencies between a Data package and a Software package Oct 6, 2018

M

Michael Lawrence avoiding circular dependencies between a Data package and a Software package Oct 6, 2018

O

Obenchain, Valerie avoiding circular dependencies between a Data package and a Software package Oct 7, 2018

O

Obenchain, Valerie avoiding circular dependencies between a Data package and a Software package Oct 7, 2018

S

Shepherd, Lori avoiding circular dependencies between a Data package and a Software package Oct 8, 2018

T

Tim Triche, Jr. avoiding circular dependencies between a Data package and a Software package Oct 8, 2018

O

Obenchain, Valerie avoiding circular dependencies between a Data package and a Software package Oct 9, 2018

T

Tim Triche, Jr. avoiding circular dependencies between a Data package and a Software package Oct 9, 2018

[Bioc-devel] cTRAP: WARNINGS in package submission

2 msgs Oct 9

N

Nuno Agostinho cTRAP: WARNINGS in package submission Oct 9, 2018

S

Shepherd, Lori cTRAP: WARNINGS in package submission Oct 9, 2018

[Bioc-devel] Roxygen documentation under windows

2 msgs Oct 8

C

Christian Mertes Roxygen documentation under windows Oct 7, 2018

S

Shepherd, Lori Roxygen documentation under windows Oct 8, 2018

[Bioc-devel] Package Submission Deadline is TODAY!!

1 msg Oct 5

S

Shepherd, Lori Package Submission Deadline is TODAY!! Oct 5, 2018

[Bioc-devel] Failure of IPAC package during check on Windows machine

2 msgs Oct 4

G

Gregory Ryslik Failure of IPAC package during check on Windows machine Oct 4, 2018

S

Shepherd, Lori Failure of IPAC package during check on Windows machine Oct 4, 2018

[Bioc-devel] a pattern to be avoided? mcols(x)$y <- z

2 msgs Oct 3

V

Vincent Carey a pattern to be avoided? mcols(x)$y <- z Oct 3, 2018

H

Hervé Pagès a pattern to be avoided? mcols(x)$y <- z Oct 3, 2018

[Bioc-devel] Windows error "UCSC library operation failed" in package karyoploteR

2 msgs Oct 1

D

Dario Strbenac Windows error "UCSC library operation failed" in package karyoploteR Sep 30, 2018

B

Bernat Gel Windows error "UCSC library operation failed" in package karyoploteR Oct 1, 2018

[Bioc-devel] Dependency to PEER

1 msg Oct 1

C

Christian Mertes Dependency to PEER Oct 1, 2018

[Bioc-devel] Bad version number have been corrected for the following packages

1 msg Oct 1

T

Turaga, Nitesh Bad version number have been corrected for the following packages Oct 1, 2018

[Bioc-devel] Contiributed annotations deadline

1 msg Oct 1

V

Van Twisk, Daniel Contiributed annotations deadline Oct 1, 2018

[Bioc-devel] Deadline for devel branch 3.8 to pass R CMD build and R CMD check

1 msg Oct 1

S

Shepherd, Lori Deadline for devel branch 3.8 to pass R CMD build and R CMD check Oct 1, 2018

[Bioc-devel] Rstudio returns fail for package check

1 msg Oct 1

A

Arman Shahrisa Rstudio returns fail for package check Oct 1, 2018

[Bioc-devel] Deadline for commits to current Release 3.7 Branch

1 msg Oct 1

S

Shepherd, Lori Deadline for commits to current Release 3.7 Branch Oct 1, 2018