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Bioc-devel January 2019

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Wednesday, January 30, 2019 8 emails
Yang Liao Rprintf in a multi-threaded environment Michael Lawrence SetMethod to dispatch on class in unattached package Hervé Pagès SetMethod to dispatch on class in unattached package Michael Lawrence SetMethod to dispatch on class in unattached package Brendan Innes SetMethod to dispatch on class in unattached package Turaga, Nitesh error pushing changes Martin Morgan SetMethod to dispatch on class in unattached package Marta Hidalgo error pushing changes
Tuesday, January 29, 2019 15 emails
Shian Su Rprintf in a multi-threaded environment Yang Liao Rprintf in a multi-threaded environment Brendan Innes SetMethod to dispatch on class in unattached package Nitesh Turaga error pushing changes Hervé Pagès missing devel experiment data builds Michael Lawrence Pushing towards a better home for matrix generics Martin Morgan Pushing towards a better home for matrix generics Hervé Pagès Pushing towards a better home for matrix generics Martin Maechler Pushing towards a better home for matrix generics Hervé Pagès Pushing towards a better home for matrix generics Luke Tierney Rprintf in a multi-threaded environment Shepherd, Lori Single Package Builder for New Submissions Martin Morgan Rprintf in a multi-threaded environment Martin Maechler Pushing towards a better home for matrix generics Martin Maechler Pushing towards a better home for matrix generics
Monday, January 28, 2019 10 emails
Yang Liao Rprintf in a multi-threaded environment Michael Lawrence Pushing towards a better home for matrix generics Shian Su Rprintf in a multi-threaded environment Hervé Pagès Question: error in makeTxDbFromUCSC Yang Liao Rprintf in a multi-threaded environment Hervé Pagès Pushing towards a better home for matrix generics Michael Lawrence Pushing towards a better home for matrix generics Hervé Pagès Pushing towards a better home for matrix generics Ludwig Geistlinger Single Package Builder for New Submissions Charlotte Soneson missing devel experiment data builds
Sunday, January 27, 2019 2 emails
Aaron Lun Pushing towards a better home for matrix generics Turaga, Nitesh update bioconductor package
Saturday, January 26, 2019 2 emails
Minoo Ashtiani update bioconductor package Vincent Carey Question: error in makeTxDbFromUCSC
Friday, January 25, 2019 2 emails
陈施航 Question: error in makeTxDbFromUCSC Martin Morgan change my email address
Thursday, January 24, 2019 5 emails
Minoo Ashtiani change my email address Shepherd, Lori Regarding a discrepancy in test_that speed between Windows and Linux Shepherd, Lori Best practices to load data for vignette/tests Shepherd, Lori Best practices to load data for vignette/tests Julien Wollbrett Best practices to load data for vignette/tests
Wednesday, January 23, 2019 3 emails
Steve Lianoglou Plans for multi-feature SingleCellExperiment? Martin Morgan submit SSH key Hu, Qiang submit SSH key
Tuesday, January 22, 2019 10 emails
Aaron Lun Plans for multi-feature SingleCellExperiment? Michael Lawrence Plans for multi-feature SingleCellExperiment? Steve Lianoglou Plans for multi-feature SingleCellExperiment? Shepherd, Lori Single Package Builder for New Submissions Shepherd, Lori Best practices to load data for vignette/tests Turaga, Nitesh Account acivation for Bioconductor Git repository Julien Wollbrett Best practices to load data for vignette/tests Martin Morgan return value of BiocManager::install() Levi Waldron return value of BiocManager::install() Levi Waldron return value of BiocManager::install()
Monday, January 21, 2019 2 emails
Jakob Theorell Regarding a discrepancy in test_that speed between Windows and Linux Christoph Bartenhagen Account acivation for Bioconductor Git repository
Saturday, January 19, 2019 2 emails
Martin Morgan Behavior of BiocManager::install() with github repos on Mac Sean Davis Behavior of BiocManager::install() with github repos on Mac
Wednesday, January 16, 2019 1 email
Dario Strbenac support the stable version of R
Tuesday, January 15, 2019 3 emails
Ludwig Geistlinger support the stable version of R Aaron Lun What is good convention for package-local BiocParallel param? Martin Morgan support the stable version of R
Monday, January 14, 2019 4 emails
Alexey Sergushichev support the stable version of R Martin Morgan support the stable version of R Martin Morgan support the stable version of R Lulu Chen support the stable version of R
Sunday, January 13, 2019 1 email
Shian Su What is good convention for package-local BiocParallel param?
Friday, January 11, 2019 1 email
Aaron Lun What is good convention for package-local BiocParallel param?
Thursday, January 10, 2019 1 email
Shian Su What is good convention for package-local BiocParallel param?
Wednesday, January 9, 2019 4 emails
Erik Fasterius scanVCF: _DNAencode(): invalid DNAString input character: '1' Obenchain, Valerie scanVCF: _DNAencode(): invalid DNAString input character: '1' Kevin RUE scanVCF: _DNAencode(): invalid DNAString input character: '1' Obenchain, Valerie scanVCF: _DNAencode(): invalid DNAString input character: '1'
Tuesday, January 8, 2019 7 emails
Hervé Pagès V8 and ggraph Alper Kucukural V8 and ggraph Kevin RUE scanVCF: _DNAencode(): invalid DNAString input character: '1' Obenchain, Valerie scanVCF: _DNAencode(): invalid DNAString input character: '1' Ryan Using SerialParam() as the registered back-end for all platforms Erik Fasterius scanVCF: _DNAencode(): invalid DNAString input character: '1' Aaron Lun Using SerialParam() as the registered back-end for all platforms
Monday, January 7, 2019 10 emails
Kasper Daniel Hansen Using SerialParam() as the registered back-end for all platforms Aaron Lun Controlling vignette compilation order Henrik Bengtsson Using SerialParam() as the registered back-end for all platforms Hervé Pagès Controlling vignette compilation order Aaron Lun Using SerialParam() as the registered back-end for all platforms Shepherd, Lori Support.bioconductor.org Updates Ryan Using SerialParam() as the registered back-end for all platforms Aaron Lun Using SerialParam() as the registered back-end for all platforms Martin Morgan Using SerialParam() as the registered back-end for all platforms Oghabian, Ali qname modification in BamFile() function of Rsamtools
Sunday, January 6, 2019 3 emails
Martin Morgan Memory usage for bplapply Aaron Lun Using SerialParam() as the registered back-end for all platforms Shian Su Memory usage for bplapply
Saturday, January 5, 2019 2 emails
Martin Morgan Memory usage for bplapply Lulu Chen Memory usage for bplapply
Friday, January 4, 2019 10 emails
Martin Morgan missing link for BiocParallel_1.16.2.tar.gz Lorsung, Michael J. missing link for BiocParallel_1.16.2.tar.gz Martin Morgan Memory usage for bplapply Obenchain, Valerie SSH keys for the newly accepted package RCM Shepherd, Lori List of Deprecated Package Bioc 3.9 Joris Meys SSH keys for the newly accepted package RCM Obenchain, Valerie devel software builds Obenchain, Valerie package download stats Martin Morgan Travis CI errors for BiocManager Aaron Lun Controlling vignette compilation order
Thursday, January 3, 2019 7 emails
Lulu Chen Memory usage for bplapply Benjamin Tremblay Error in Bioc windows check report Erik Fasterius Travis CI errors for BiocManager Lulu Chen how to achieve reproducibility with BiocParallel regardless of number of threads and OS (set.seed is disallowed) Martin Morgan Travis CI errors for BiocManager Shepherd, Lori Mixed species dataset for makeExperimentHubMetadata Erik Fasterius Travis CI errors for BiocManager
Wednesday, January 2, 2019 8 emails
Aaron Lun how to achieve reproducibility with BiocParallel regardless of number of threads and OS (set.seed is disallowed) Martin Morgan Controlling vignette compilation order Lu, Dongyi (Lambda) Mixed species dataset for makeExperimentHubMetadata Turaga, Nitesh github bridge to bioconductor Karl Stamm github bridge to bioconductor Turaga, Nitesh github bridge to bioconductor Karl Stamm github bridge to bioconductor Martin Morgan how to achieve reproducibility with BiocParallel regardless of number of threads and OS (set.seed is disallowed)
Tuesday, January 1, 2019 1 email
Martin Morgan Error in Bioc windows check report