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Bioc-devel June 2020

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[Bioc-devel] single package builder updates
1 msg
Shepherd, Lori single package builder updates Jun 30, 2020
[Bioc-devel] New maintainer request for GAPGOM package
2 msgs
Casper van Mourik New maintainer request for GAPGOM package Jun 25, 2020
Turaga, Nitesh New maintainer request for GAPGOM package Jun 29, 2020
[Bioc-devel] Unable to reproduce OS/X build error for "netDx" package
2 msgs
Shraddha Pai Unable to reproduce OS/X build error for "netDx" package Jun 24, 2020
Mike Smith Unable to reproduce OS/X build error for "netDx" package Jun 26, 2020
[Bioc-devel] Deprecated a contained class
2 msgs
Martin Morgan Deprecated a contained class Jun 26, 2020
Hervé Pagès Deprecated a contained class Jun 26, 2020
[Bioc-devel] How to set dimnames inside constructor function?
2 msgs
Muad Abd El Hay How to set dimnames inside constructor function? Jun 18, 2020
Hervé Pagès How to set dimnames inside constructor function? Jun 25, 2020
[Bioc-devel] lipidr: Unable to reproduce error (possibly from S4Vectors)
8 msgs
Ahmed Mohamed lipidr: Unable to reproduce error (possibly from S4Vectors) Jun 16, 2020
Vincent Carey lipidr: Unable to reproduce error (possibly from S4Vectors) Jun 17, 2020
Ahmed Mohamed lipidr: Unable to reproduce error (possibly from S4Vectors) Jun 17, 2020
Vincent Carey lipidr: Unable to reproduce error (possibly from S4Vectors) Jun 17, 2020
Martin Morgan lipidr: Unable to reproduce error (possibly from S4Vectors) Jun 17, 2020
Ahmed Mohamed lipidr: Unable to reproduce error (possibly from S4Vectors) Jun 21, 2020
Shepherd, Lori lipidr: Unable to reproduce error (possibly from S4Vectors) Jun 22, 2020
Hervé Pagès lipidr: Unable to reproduce error (possibly from S4Vectors) Jun 25, 2020
[Bioc-devel] Passing BiocCheck with roxygen2 tags.
4 msgs
Erik Christensen Passing BiocCheck with roxygen2 tags. Jun 25, 2020
Shepherd, Lori Passing BiocCheck with roxygen2 tags. Jun 25, 2020
Mike Smith Passing BiocCheck with roxygen2 tags. Jun 25, 2020
Erik Christensen Passing BiocCheck with roxygen2 tags. Jun 25, 2020
[Bioc-devel] git fetch and push issues to TreeAndLeaf
2 msgs
Milena Andreuzo git fetch and push issues to TreeAndLeaf Jun 24, 2020
Nitesh Turaga git fetch and push issues to TreeAndLeaf Jun 24, 2020
[Bioc-devel] git push access to MsCoreUtils repository
2 msgs
Sebastian Gibb git push access to MsCoreUtils repository Jun 24, 2020
Nitesh Turaga git push access to MsCoreUtils repository Jun 24, 2020
[Bioc-devel] Package mantenence QSutils
2 msgs
guerrero murillo, mercedes Package mantenence QSutils Jun 23, 2020
Shepherd, Lori Package mantenence QSutils Jun 23, 2020
[Bioc-devel] Bioconductor package MEAT not updating
2 msgs
Sarah Voisin Bioconductor package MEAT not updating Jun 23, 2020
Shepherd, Lori Bioconductor package MEAT not updating Jun 23, 2020
[Bioc-devel] Bioconductor package devel site not updating
4 msgs
Hoffman, Gabriel Bioconductor package devel site not updating Jun 18, 2020
Shepherd, Lori Bioconductor package devel site not updating Jun 19, 2020
Hoffman, Gabriel Bioconductor package devel site not updating Jun 19, 2020
Shepherd, Lori Bioconductor package devel site not updating Jun 22, 2020
[Bioc-devel] updating package on the development version
5 msgs
Dwivedi, Bhakti updating package on the development version Jun 18, 2020
Shepherd, Lori updating package on the development version Jun 19, 2020
Dwivedi, Bhakti updating package on the development version Jun 19, 2020
Martin Morgan updating package on the development version Jun 20, 2020
Dwivedi, Bhakti updating package on the development version Jun 20, 2020
[Bioc-devel] Bioconductor credentials issue
1 msg
Nitesh Turaga Bioconductor credentials issue Jun 20, 2020
[Bioc-devel] Bioconductor credentials issue
3 msgs
Nitesh Turaga Bioconductor credentials issue Jun 19, 2020
Chris Eeles Bioconductor credentials issue Jun 19, 2020
Nitesh Turaga Bioconductor credentials issue Jun 20, 2020
[Bioc-devel] Lost bioconductor email
2 msgs
Jurrian de Kanter Lost bioconductor email Jun 17, 2020
Nitesh Turaga Lost bioconductor email Jun 19, 2020
[Bioc-devel] Maintainer transfer
2 msgs
Jakob Wirbel Maintainer transfer Jun 18, 2020
Nitesh Turaga Maintainer transfer Jun 19, 2020
[Bioc-devel] Problem installing sesameData on locked down server
5 msgs
Schneper, Lisa M. Problem installing sesameData on locked down server Jun 16, 2020
Shepherd, Lori Problem installing sesameData on locked down server Jun 17, 2020
Schneper, Lisa M. Problem installing sesameData on locked down server Jun 17, 2020
Shepherd, Lori Problem installing sesameData on locked down server Jun 19, 2020
Schneper, Lisa M. Problem installing sesameData on locked down server Jun 19, 2020
[Bioc-devel] Website Not Updating
3 msgs
Shepherd, Lori Website Not Updating Jun 18, 2020
Chengyang.Ji12 Website Not Updating Jun 18, 2020
Shepherd, Lori Website Not Updating Jun 19, 2020
[Bioc-devel] Bioconductor credentials issue
2 msgs
Chris Eeles Bioconductor credentials issue Jun 17, 2020
Nitesh Turaga Bioconductor credentials issue Jun 18, 2020
[Bioc-devel] Updates to Single Package Builder for submitting new packages
2 msgs
Shepherd, Lori Updates to Single Package Builder for submitting new packages Jun 17, 2020
Shepherd, Lori Updates to Single Package Builder for submitting new packages Jun 17, 2020
[Bioc-devel] bioconductor singularity images
5 msgs
Subramanian, Poorani (NIH/NIAID) [C] bioconductor singularity images Jun 15, 2020
Nitesh Turaga bioconductor singularity images Jun 15, 2020
Nitesh Turaga bioconductor singularity images Jun 15, 2020
Subramanian, Poorani (NIH/NIAID) [C] bioconductor singularity images Jun 15, 2020
Nitesh Turaga bioconductor singularity images Jun 15, 2020
[Bioc-devel] fatal: 'upstream/RELEASE_3_11' is not a commit and a branch 'RELEASE_3_11' cannot be created from it
8 msgs
Bhagwat, Aditya fatal: 'upstream/RELEASE_3_11' is not a commit and a branch 'RELEASE_3_11' cannot be created from it Jun 11, 2020
Nitesh Turaga fatal: 'upstream/RELEASE_3_11' is not a commit and a branch 'RELEASE_3_11' cannot be created from it Jun 11, 2020
Shepherd, Lori fatal: 'upstream/RELEASE_3_11' is not a commit and a branch 'RELEASE_3_11' cannot be created from it Jun 11, 2020
Bhagwat, Aditya fatal: 'upstream/RELEASE_3_11' is not a commit and a branch 'RELEASE_3_11' cannot be created from it Jun 11, 2020
Shepherd, Lori fatal: 'upstream/RELEASE_3_11' is not a commit and a branch 'RELEASE_3_11' cannot be created from it Jun 12, 2020
Bhagwat, Aditya fatal: 'upstream/RELEASE_3_11' is not a commit and a branch 'RELEASE_3_11' cannot be created from it Jun 12, 2020
Shepherd, Lori fatal: 'upstream/RELEASE_3_11' is not a commit and a branch 'RELEASE_3_11' cannot be created from it Jun 12, 2020
Bhagwat, Aditya fatal: 'upstream/RELEASE_3_11' is not a commit and a branch 'RELEASE_3_11' cannot be created from it Jun 12, 2020
[Bioc-devel] Fwd: netDx: Build errors despite code working in BioC docker
3 msgs
Shraddha Pai netDx: Build errors despite code working in BioC docker Jun 12, 2020
Shepherd, Lori netDx: Build errors despite code working in BioC docker Jun 12, 2020
Shraddha Pai netDx: Build errors despite code working in BioC docker Jun 12, 2020
[Bioc-devel] netDx: Build errors despite code working in BioC docker
2 msgs
Shraddha Pai netDx: Build errors despite code working in BioC docker Jun 11, 2020
Shepherd, Lori netDx: Build errors despite code working in BioC docker Jun 12, 2020
[Bioc-devel] Subscription to the list problem
3 msgs
ELENI ADAM Subscription to the list problem Jun 9, 2020
Martin Maechler Subscription to the list problem Jun 11, 2020
ELENI ADAM Subscription to the list problem Jun 11, 2020
[Bioc-devel] Fwd: safe: Bioc build error in release and devel
1 msg
Nitesh Turaga safe: Bioc build error in release and devel Jun 11, 2020
[Bioc-devel] FEM package update and release
2 msgs
Zhen Yang FEM package update and release Jun 10, 2020
Shepherd, Lori FEM package update and release Jun 10, 2020
[Bioc-devel] GenomicScores: irreproducible build error caused by gwascat
15 msgs
Robert Castelo GenomicScores: irreproducible build error caused by gwascat Jun 5, 2020
Martin Morgan GenomicScores: irreproducible build error caused by gwascat Jun 5, 2020
Robert Castelo GenomicScores: irreproducible build error caused by gwascat Jun 5, 2020
Vincent Carey GenomicScores: irreproducible build error caused by gwascat Jun 5, 2020
Martin Morgan GenomicScores: irreproducible build error caused by gwascat Jun 5, 2020
Robert Castelo GenomicScores: irreproducible build error caused by gwascat Jun 5, 2020
Robert Castelo GenomicScores: irreproducible build error caused by gwascat Jun 5, 2020
Martin Morgan GenomicScores: irreproducible build error caused by gwascat Jun 5, 2020
Vincent Carey GenomicScores: irreproducible build error caused by gwascat Jun 5, 2020
Robert Castelo GenomicScores: irreproducible build error caused by gwascat Jun 5, 2020
Hervé Pagès GenomicScores: irreproducible build error caused by gwascat Jun 8, 2020
Hervé Pagès GenomicScores: irreproducible build error caused by gwascat Jun 8, 2020
Martin Morgan GenomicScores: irreproducible build error caused by gwascat Jun 9, 2020
Robert Castelo GenomicScores: irreproducible build error caused by gwascat Jun 9, 2020
Hervé Pagès GenomicScores: irreproducible build error caused by gwascat Jun 9, 2020
[Bioc-devel] Submitting SSH key
2 msgs
Alemu Takele Assefa Submitting SSH key Jun 9, 2020
Nitesh Turaga Submitting SSH key Jun 9, 2020
[Bioc-devel] List of Deprecated Packages for Bioc 3.12
2 msgs
Shepherd, Lori List of Deprecated Packages for Bioc 3.12 Jun 8, 2020
Ludwig Geistlinger List of Deprecated Packages for Bioc 3.12 Jun 8, 2020
[Bioc-devel] Bioconductor package tidybulk
7 msgs
stefano iacus Bioconductor package tidybulk Jun 3, 2020
Shepherd, Lori Bioconductor package tidybulk Jun 3, 2020
stefano iacus Bioconductor package tidybulk Jun 3, 2020
Shepherd, Lori Bioconductor package tidybulk Jun 4, 2020
stefano iacus Bioconductor package tidybulk Jun 5, 2020
stefano iacus Bioconductor package tidybulk Jun 7, 2020
Martin Morgan Bioconductor package tidybulk Jun 8, 2020
[Bioc-devel] can I link upstream/DEVELOPMENT_3_12 with a branch that is not master?
2 msgs
stefano iacus can I link upstream/DEVELOPMENT_3_12 with a branch that is not master? Jun 7, 2020
Martin Morgan can I link upstream/DEVELOPMENT_3_12 with a branch that is not master? Jun 8, 2020
[Bioc-devel] MotifDb missing some PWMs from FlyFactorSurvey database
4 msgs
Nystrom, Spencer MotifDb missing some PWMs from FlyFactorSurvey database Jun 5, 2020
Paul Shannon MotifDb missing some PWMs from FlyFactorSurvey database Jun 5, 2020
Shepherd, Lori MotifDb missing some PWMs from FlyFactorSurvey database Jun 5, 2020
Paul Shannon MotifDb missing some PWMs from FlyFactorSurvey database Jun 5, 2020
[Bioc-devel] UnicodeDecodeError: 'ascii' codec can't decode byte 0xe2 in position 234445: ordinal not in range(128)
1 msg
Nitesh Turaga UnicodeDecodeError: 'ascii' codec can't decode byte 0xe2 in position 234445: ordinal not in range(128) Jun 4, 2020
[Bioc-devel] SSH Issues
4 msgs
Nitesh Turaga SSH Issues Jun 3, 2020
Chris Eeles SSH Issues Jun 3, 2020
Nitesh Turaga SSH Issues Jun 3, 2020
Nitesh Turaga SSH Issues Jun 4, 2020
[Bioc-devel] How I hide non-exported function from the manual
7 msgs
stefano iacus How I hide non-exported function from the manual Jun 3, 2020
Vincent Carey How I hide non-exported function from the manual Jun 3, 2020
Vincent Carey How I hide non-exported function from the manual Jun 3, 2020
Henrik Bengtsson How I hide non-exported function from the manual Jun 3, 2020
stefano iacus How I hide non-exported function from the manual Jun 4, 2020
Lluís Revilla How I hide non-exported function from the manual Jun 4, 2020
Martin Morgan How I hide non-exported function from the manual Jun 4, 2020
[Bioc-devel] git push permission denied
3 msgs
Christian Mertes git push permission denied Jun 1, 2020
Nitesh Turaga git push permission denied Jun 2, 2020
Christian Mertes git push permission denied Jun 4, 2020
[Bioc-devel] Migration of many scater utilities to scuttle
1 msg
Aaron Lun Migration of many scater utilities to scuttle Jun 3, 2020
[Bioc-devel] SSH Issues
2 msgs
Chris Eeles SSH Issues Jun 3, 2020
Nitesh Turaga SSH Issues Jun 3, 2020
[Bioc-devel] Reducing dependencies
5 msgs
Koen Van den Berge Reducing dependencies Jun 2, 2020
Henrik Bengtsson Reducing dependencies Jun 2, 2020
Robert Castelo Reducing dependencies Jun 3, 2020
Aaron Lun Reducing dependencies Jun 3, 2020
Sean Davis Reducing dependencies Jun 3, 2020
[Bioc-devel] Bioconductor package BEARscc
1 msg
Severson, David T Bioconductor package BEARscc Jun 2, 2020
[Bioc-devel] Updated annotation packages
1 msg
Interdonato, Kayla Updated annotation packages Jun 2, 2020
[Bioc-devel] Fwd: [cbioportal] Installation cBioPortalData error
1 msg
Levi Waldron Installation cBioPortalData error Jun 1, 2020
[Bioc-devel] [External] Re: Package Submission Limbo
1 msg
Nitesh Turaga Package Submission Limbo Jun 1, 2020