Bioc-devel - September 2020 - Thread View

[Bioc-devel] SSL error on Ubuntu 20.04

1 msg Sep 30

Selles Vidal, Lara SSL error on Ubuntu 20.04 Sep 30, 2020

[Bioc-devel] Package failing specifically on OS X - Java version? How to debug?

1 msg Sep 30

Shraddha Pai Package failing specifically on OS X - Java version? How to debug? Sep 30, 2020

[Bioc-devel] Git pack file greater than 5MB

1 msg Sep 30

McGrath, Max Git pack file greater than 5MB Sep 30, 2020

[Bioc-devel] Bioconductor Release 3.11 Code Freeze Deadline

1 msg Sep 29

Shepherd, Lori Bioconductor Release 3.11 Code Freeze Deadline Sep 29, 2020

[Bioc-devel] Deadline for devel branch 3.12 to pass R CMD build and R CMD check

1 msg Sep 29

Shepherd, Lori Deadline for devel branch 3.12 to pass R CMD build and R CMD check Sep 29, 2020

[Bioc-devel] DMCHMM package new release

2 msgs Sep 29

Farhad Shokoohi DMCHMM package new release Sep 27, 2020

Nitesh Turaga DMCHMM package new release Sep 29, 2020

[Bioc-devel] Reset BioCredentials

2 msgs Sep 29

Lei Huang Reset BioCredentials Sep 27, 2020

Turaga, Nitesh Reset BioCredentials Sep 29, 2020

[Bioc-devel] Few questions of maintaining a new bioconductor package

8 msgs Sep 29

Krutik Patel (PGR) Few questions of maintaining a new bioconductor package Sep 18, 2020

Nitesh Turaga Few questions of maintaining a new bioconductor package Sep 18, 2020

Shepherd, Lori Few questions of maintaining a new bioconductor package Sep 18, 2020

Krutik Patel (PGR) Few questions of maintaining a new bioconductor package Sep 19, 2020

Nitesh Turaga Few questions of maintaining a new bioconductor package Sep 24, 2020

Krutik Patel (PGR) Few questions of maintaining a new bioconductor package Sep 28, 2020

Nitesh Turaga Few questions of maintaining a new bioconductor package Sep 28, 2020

Nitesh Turaga Few questions of maintaining a new bioconductor package Sep 29, 2020

[Bioc-devel] TIMEOUT - Can't manage to pass tests to long tests

1 msg Sep 28

Prompsy Pacome TIMEOUT - Can't manage to pass tests to long tests Sep 28, 2020

[Bioc-devel] Help me check if I push my package to git bioconductor

2 msgs Sep 28

Xiaowen Chen Help me check if I push my package to git bioconductor Sep 28, 2020

Shepherd, Lori Help me check if I push my package to git bioconductor Sep 28, 2020

[Bioc-devel] Submitting ssh key

2 msgs Sep 28

Spiro Stilianoudakis Submitting ssh key Sep 25, 2020

Shepherd, Lori Submitting ssh key Sep 28, 2020

[Bioc-devel] Best object structure for representing a pairwise genome alignment ?

1 msg Sep 27

Paul Harrison Best object structure for representing a pairwise genome alignment ? Sep 27, 2020

[Bioc-devel] Help finding helpful diagnostic info in the build results report

2 msgs Sep 26

Thistlethwaite, Lillian Rosa Help finding helpful diagnostic info in the build results report Sep 25, 2020

Mike Smith Help finding helpful diagnostic info in the build results report Sep 26, 2020

[Bioc-devel] An issue about submitting my SSH key to Bioconductor

2 msgs Sep 25

Xiaowen Chen An issue about submitting my SSH key to Bioconductor Sep 25, 2020

Nitesh Turaga An issue about submitting my SSH key to Bioconductor Sep 25, 2020

[Bioc-devel] [EXTERNAL]Re: Update R package I developed which has been released by bioconductor

3 msgs Sep 25

Xiaowen Chen Update R package I developed which has been released by bioconductor Sep 24, 2020

Shepherd, Lori Update R package I developed which has been released by bioconductor Sep 25, 2020

Xiaowen Chen Update R package I developed which has been released by bioconductor Sep 25, 2020

[Bioc-devel] New Package Submission Deadline for Bioc Release 3.12

1 msg Sep 25

Shepherd, Lori New Package Submission Deadline for Bioc Release 3.12 Sep 25, 2020

[Bioc-devel] Bioconductor Git Credentials

1 msg Sep 24

Xiaowen Chen Bioconductor Git Credentials Sep 24, 2020

[Bioc-devel] [EXTERNAL]Re: Update R package I developed which has been released by bioconductor

1 msg Sep 24

Xiaowen Chen Update R package I developed which has been released by bioconductor Sep 24, 2020

[Bioc-devel] Extensive updates to DiffBind: help reviewing docs and/or beta testing?

2 msgs Sep 24

Rory Stark Extensive updates to DiffBind: help reviewing docs and/or beta testing? Sep 22, 2020

Shepherd, Lori Extensive updates to DiffBind: help reviewing docs and/or beta testing? Sep 24, 2020

[Bioc-devel] Rmd vignette failures

1 msg Sep 23

Leonardo Collado Torres Rmd vignette failures Sep 23, 2020

[Bioc-devel] BiocCheckGitClone error

7 msgs Sep 23

Emilie Secherre BiocCheckGitClone error Sep 22, 2020

Shepherd, Lori BiocCheckGitClone error Sep 22, 2020

Emilie Secherre BiocCheckGitClone error Sep 22, 2020

Shepherd, Lori BiocCheckGitClone error Sep 22, 2020

Emilie Secherre BiocCheckGitClone error Sep 22, 2020

Emilie Secherre BiocCheckGitClone error Sep 23, 2020

Shepherd, Lori BiocCheckGitClone error Sep 23, 2020

[Bioc-devel] Bioconductor package DegNorm

2 msgs Sep 22

Jiping Wang Bioconductor package DegNorm Sep 22, 2020

Shepherd, Lori Bioconductor package DegNorm Sep 22, 2020

[Bioc-devel] Best object structure for representing a pairwise genome alignment ?

3 msgs Sep 21

Charles Plessy Best object structure for representing a pairwise genome alignment ? Sep 17, 2020

Vincent Carey Best object structure for representing a pairwise genome alignment ? Sep 18, 2020

Hervé Pagès Best object structure for representing a pairwise genome alignment ? Sep 21, 2020

[Bioc-devel] "length(url) == 1 is not TRUE" error for vignette only on build system

4 msgs Sep 21

Hervé Pagès "length(url) == 1 is not TRUE" error for vignette only on build system Sep 11, 2020

Martin Morgan "length(url) == 1 is not TRUE" error for vignette only on build system Sep 11, 2020

Shepherd, Lori "length(url) == 1 is not TRUE" error for vignette only on build system Sep 14, 2020

Shraddha Pai "length(url) == 1 is not TRUE" error for vignette only on build system Sep 21, 2020

[Bioc-devel] Update R package I developed which has been released by bioconductor

2 msgs Sep 21

Xiaowen Chen Update R package I developed which has been released by bioconductor Sep 21, 2020

Shepherd, Lori Update R package I developed which has been released by bioconductor Sep 21, 2020

[Bioc-devel] Bioconductor affy author questions

2 msgs Sep 20

Henry Luo Bioconductor affy author questions Sep 20, 2020

Lluís Revilla Bioconductor affy author questions Sep 20, 2020

[Bioc-devel] Update R package I developed which has been released by bioconductor

2 msgs Sep 20

Xiaowen Chen Update R package I developed which has been released by bioconductor Sep 18, 2020

Dario Strbenac Update R package I developed which has been released by bioconductor Sep 20, 2020

[Bioc-devel] MPFE Bioconductor package

8 msgs Sep 19

Stone, Matt MPFE Bioconductor package Sep 16, 2020

Conrad Burden MPFE Bioconductor package Sep 16, 2020

Jiefei Wang MPFE Bioconductor package Sep 17, 2020

Conrad Burden MPFE Bioconductor package Sep 17, 2020

Turaga, Nitesh MPFE Bioconductor package Sep 18, 2020

Jiefei Wang MPFE Bioconductor package Sep 18, 2020

Vincent Carey MPFE Bioconductor package Sep 18, 2020

Conrad Burden MPFE Bioconductor package Sep 19, 2020

[Bioc-devel] glitches with releaseName() and seqlevelsStyle()

4 msgs Sep 18

Robert Castelo glitches with releaseName() and seqlevelsStyle() Sep 2, 2020

Hervé Pagès glitches with releaseName() and seqlevelsStyle() Sep 2, 2020

Robert Castelo glitches with releaseName() and seqlevelsStyle() Sep 3, 2020

Hervé Pagès glitches with releaseName() and seqlevelsStyle() Sep 18, 2020

[Bioc-devel] [Bioconductor/Contributions] New package: preciseTAD (#1553)

1 msg Sep 18

Spiro Stilianoudakis New package: preciseTAD (#1553) Sep 18, 2020

[Bioc-devel] Granting package access to other developers

3 msgs Sep 17

Jason Ji Granting package access to other developers Sep 15, 2020

Nitesh Turaga Granting package access to other developers Sep 17, 2020

Jason Ji Granting package access to other developers Sep 17, 2020

[Bioc-devel] List of Deprecated Packages for Bioc3.12

2 msgs Sep 17

Shepherd, Lori List of Deprecated Packages for Bioc3.12 Sep 3, 2020

Alexey Sergushichev List of Deprecated Packages for Bioc3.12 Sep 17, 2020

[Bioc-devel] seq2pathway install and build error

2 msgs Sep 17

Yuxi Sun seq2pathway install and build error Sep 16, 2020

Martin Morgan seq2pathway install and build error Sep 17, 2020

[Bioc-devel] MPFE Bioconductor package

1 msg Sep 16

Turaga, Nitesh MPFE Bioconductor package Sep 16, 2020

[Bioc-devel] DECIPHER questions

2 msgs Sep 16

Henry Luo DECIPHER questions Sep 16, 2020

Jiefei Wang DECIPHER questions Sep 16, 2020

[Bioc-devel] Packagebuilder skips building of MsCoreUtils package

3 msgs Sep 16

Rainer Johannes Packagebuilder skips building of MsCoreUtils package Sep 15, 2020

Shepherd, Lori Packagebuilder skips building of MsCoreUtils package Sep 15, 2020

Rainer Johannes Packagebuilder skips building of MsCoreUtils package Sep 16, 2020

[Bioc-devel] How to verify your pushed changes were received

2 msgs Sep 13

Thistlethwaite, Lillian Rosa How to verify your pushed changes were received Sep 12, 2020

Martin Morgan How to verify your pushed changes were received Sep 13, 2020

[Bioc-devel] Subscribing to bioc-devel mailing list not working?

2 msgs Sep 12

Thistlethwaite, Lillian Rosa Subscribing to bioc-devel mailing list not working? Sep 11, 2020

Martin Morgan Subscribing to bioc-devel mailing list not working? Sep 12, 2020

[Bioc-devel] Java version issue on Bioconductor test platform

5 msgs Sep 12

Hervé Pagès Java version issue on Bioconductor test platform Sep 2, 2020

Arman Shahrisa Java version issue on Bioconductor test platform Sep 2, 2020

Arman Shahrisa Java version issue on Bioconductor test platform Sep 9, 2020

Hervé Pagès Java version issue on Bioconductor test platform Sep 10, 2020

Arman Shahrisa Java version issue on Bioconductor test platform Sep 12, 2020

[Bioc-devel] "length(url) == 1 is not TRUE" error for vignette only on build system

3 msgs Sep 11

Shraddha Pai "length(url) == 1 is not TRUE" error for vignette only on build system Sep 11, 2020

Martin Morgan "length(url) == 1 is not TRUE" error for vignette only on build system Sep 11, 2020

Hervé Pagès "length(url) == 1 is not TRUE" error for vignette only on build system Sep 11, 2020

[Bioc-devel] Vignette examples

4 msgs Sep 10

Emilie Secherre Vignette examples Sep 10, 2020

Shepherd, Lori Vignette examples Sep 10, 2020

Manders-2, F.M. Vignette examples Sep 10, 2020

Sean Davis Vignette examples Sep 10, 2020

[Bioc-devel] fetch upstream of an existing package

1 msg Sep 10

Turaga, Nitesh fetch upstream of an existing package Sep 10, 2020

[Bioc-devel] Build issues under macOS

3 msgs Sep 9

McDavid, Andrew Build issues under macOS Sep 9, 2020

Shepherd, Lori Build issues under macOS Sep 9, 2020

[Bioc-devel] Single Package Builder Updates

2 msgs Sep 9

Shepherd, Lori Single Package Builder Updates Sep 9, 2020

[Bioc-devel] DOI of the package scTHI not resolving

2 msgs Sep 9

Michele Ceccarelli DOI of the package scTHI not resolving Sep 8, 2020

Martin Morgan DOI of the package scTHI not resolving Sep 9, 2020

[Bioc-devel] Build issues under macOS

1 msg Sep 8

Stone, Matt Build issues under macOS Sep 8, 2020

[Bioc-devel] Bioconductor Release 3.12 Schedule Posted

1 msg Sep 8

Shepherd, Lori Bioconductor Release 3.12 Schedule Posted Sep 8, 2020

[Bioc-devel] Hotfix rejected by git

4 msgs Sep 8

Spivakov, Mikhail Hotfix rejected by git Sep 8, 2020

Shepherd, Lori Hotfix rejected by git Sep 8, 2020

Nitesh Turaga Hotfix rejected by git Sep 8, 2020

Spivakov, Mikhail Hotfix rejected by git Sep 8, 2020

[Bioc-devel] Maintenance of MetaNeighbor package

5 msgs Sep 8

Nitesh Turaga Maintenance of MetaNeighbor package Sep 3, 2020

Stephan Fischer Maintenance of MetaNeighbor package Sep 3, 2020

Jesse Gillis Maintenance of MetaNeighbor package Sep 3, 2020

Manthan Shah Maintenance of MetaNeighbor package Sep 3, 2020

Nitesh Turaga Maintenance of MetaNeighbor package Sep 8, 2020

[Bioc-devel] Pushing to Bioconductor repo gives errors

4 msgs Sep 8

Alina Selega Pushing to Bioconductor repo gives errors Sep 6, 2020

Nitesh Turaga Pushing to Bioconductor repo gives errors Sep 7, 2020

Nitesh Turaga Pushing to Bioconductor repo gives errors Sep 8, 2020

[Bioc-devel] maintainer access to scater

2 msgs Sep 8

Aaron Lun maintainer access to scater Sep 7, 2020

Nitesh Turaga maintainer access to scater Sep 8, 2020

[Bioc-devel] fetch upstream of an existing package

1 msg Sep 8

Turaga, Nitesh fetch upstream of an existing package Sep 8, 2020

[Bioc-devel] fetch upstream of an existing package

1 msg Sep 7

Turaga, Nitesh fetch upstream of an existing package Sep 7, 2020

[Bioc-devel] BioCAsia Virtual Meeting, 15-18 October 2020

1 msg Sep 6

Matt Ritchie BioCAsia Virtual Meeting, 15-18 October 2020 Sep 6, 2020

[Bioc-devel] Fwd: fetch upstream of an existing package

2 msgs Sep 3

Turaga, Nitesh fetch upstream of an existing package Sep 2, 2020

Irene Zeng fetch upstream of an existing package Sep 3, 2020

[Bioc-devel] Bioconductor package DegNorm

1 msg Sep 2

Jiping Wang Bioconductor package DegNorm Sep 2, 2020

[Bioc-devel] BiocViews error during build on macOS

2 msgs Sep 2

Carlos A. Catania (AKA Harpo) BiocViews error during build on macOS Sep 1, 2020

Shepherd, Lori BiocViews error during build on macOS Sep 2, 2020

[Bioc-devel] files present in github repository

1 msg Sep 1

Carlos A. Catania (AKA Harpo) files present in github repository Sep 1, 2020

Bioc-devel September 2020