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Bioc-devel October 2021

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Wednesday, October 27, 2021 4 emails
Hervé Pagès Windows specific error during CHECK Shepherd, Lori Bioconductor 3.14 is Released! Tamilselvi Guharaj bumphunter 1.35.0 - GENCODE FTP Server File Download Error Nitesh Turaga bumphunter 1.35.0 - GENCODE FTP Server File Download Error
Tuesday, October 26, 2021 8 emails
matine rb Updating the vignette in the published package Felix Ernst Windows specific error during CHECK Hervé Pagès Windows specific error during CHECK Felix Ernst Windows specific error during CHECK Hervé Pagès Updating the vignette in the published package matine rb Updating the vignette in the published package Nitesh Turaga Release 3.14 process - stop all commits Nitesh Turaga Release 3.14 process - stop all commits
Monday, October 25, 2021 11 emails
Tamilselvi Guharaj bumphunter 1.35.0 - GENCODE FTP Server File Download Error Nitesh Turaga hypeR Bioconductor package Jiefei Wang Problems with BiocParallel on Windows Giulia Pais Problems with BiocParallel on Windows Jiefei Wang Problems with BiocParallel on Windows Giulia Pais Problems with BiocParallel on Windows Jiefei Wang Problems with BiocParallel on Windows Shepherd, Lori Last day to make commits before Bioconductor RELEASE 3.14 Giulia Pais Problems with BiocParallel on Windows Jiefei Wang Problems with BiocParallel on Windows Giulia Pais Problems with BiocParallel on Windows
Sunday, October 24, 2021 1 email
Laurent Gatto Package name
Friday, October 22, 2021 9 emails
Hervé Pagès JAVA_HOME cannot be determined on Windows on Bioconductor platform report Vincent Carey JAVA_HOME cannot be determined on Windows on Bioconductor platform report Shepherd, Lori Updating the vignette in the published package matine rb Updating the vignette in the published package Augustin Luna JAVA_HOME cannot be determined on Windows on Bioconductor platform report Dolors Pelegrí methylclock error in vignette (windows build) Henrik Bengtsson Package name Shepherd, Lori Deprecation genphen Wolfgang Huber Package name
Thursday, October 21, 2021 10 emails
Hervé Pagès long tests results in package RSS feed Hervé Pagès How to simplify install when package dependency requires compilation from source Hervé Pagès mosbi package: Suggested dependency not available Simo Kitanovski Deprecation genphen Hervé Pagès long tests results in package RSS feed Shraddha Pai How to simplify install when package dependency requires compilation from source Shepherd, Lori mosbi package: Suggested dependency not available Tim Daniel Rose mosbi package: Suggested dependency not available Shepherd, Lori NxtIRFcore build error; missing recently submitted data package NxtIRFdata Shepherd, Lori Package name
Wednesday, October 20, 2021 5 emails
Pierrick Roger long tests results in package RSS feed Laurent Gatto Package name Alex Wong NxtIRFcore build error; missing recently submitted data package NxtIRFdata Shepherd, Lori Deprecation of scClassifR Johannes Griss Deprecation of scClassifR
Tuesday, October 19, 2021 5 emails
Hervé Pagès Acceptable Updates Post-API Freeze McGrath, Max Acceptable Updates Post-API Freeze Marcel Ramos EXTERNAL: Re: Too many dependencies / MultiAssayExperiment + rtracklayer Henrik Bengtsson Too many dependencies / MultiAssayExperiment + rtracklayer Shraddha Pai EXTERNAL: Re: Too many dependencies / MultiAssayExperiment + rtracklayer
Monday, October 18, 2021 8 emails
Hervé Pagès EXTERNAL: Re: Too many dependencies / MultiAssayExperiment + rtracklayer Marcel Ramos EXTERNAL: Re: Too many dependencies / MultiAssayExperiment + rtracklayer Hervé Pagès JAVA_HOME cannot be determined on Windows on Bioconductor platform report Vincent Carey JAVA_HOME cannot be determined on Windows on Bioconductor platform report Augustin Luna JAVA_HOME cannot be determined on Windows on Bioconductor platform report Shraddha Pai Too many dependencies / MultiAssayExperiment + rtracklayer Shepherd, Lori Important Deadlines for Release 3.14 This Week! Shepherd, Lori Important Deadlines for Release 3.14 This Week!
Sunday, October 17, 2021 1 email
Marcel Ramos EXTERNAL: ERROR: Avoid references to external hosting platforms
Saturday, October 16, 2021 3 emails
Hervé Pagès Strange "internal logical NA value has been modified" error Pariksheet Nanda Strange "internal logical NA value has been modified" error Marta Interlandi EXTERNAL: ERROR: Avoid references to external hosting platforms
Friday, October 15, 2021 12 emails
Hervé Pagès Delayed Assignment to S4 Slots Hervé Pagès Delayed Assignment to S4 Slots Hervé Pagès Best Practices for Renaming S4 Slots Vincent Carey Best Practices for Renaming S4 Slots Chris Eeles Best Practices for Renaming S4 Slots Hervé Pagès Best Practices for Renaming S4 Slots Vincent Carey Best Practices for Renaming S4 Slots Chris Eeles Best Practices for Renaming S4 Slots Hervé Pagès Best Practices for Renaming S4 Slots Chris Eeles Best Practices for Renaming S4 Slots Hervé Pagès Best Practices for Renaming S4 Slots Hervé Pagès Best Practices for Renaming S4 Slots
Thursday, October 14, 2021 9 emails
Zhi Yang Failed to locate any version of JAGS version 4 Marcel Ramos EXTERNAL: ERROR: Avoid references to external hosting platforms Chris Eeles Best Practices for Renaming S4 Slots Shepherd, Lori Updating experiment hub data for NanoporeRNASeq CHEN Ying Updating experiment hub data for NanoporeRNASeq Marta Interlandi ERROR: Avoid references to external hosting platforms Johannes Griss ReactomeGSA - SSL Certificate Error on MacOS build Jennifer Wokaty ReactomeGSA - SSL Certificate Error on MacOS build Johannes Griss ReactomeGSA - SSL Certificate Error on MacOS build
Wednesday, October 13, 2021 17 emails
Dario Strbenac Delayed Assignment to S4 Slots Hervé Pagès Strange "internal logical NA value has been modified" error Pariksheet Nanda Strange "internal logical NA value has been modified" error Pariksheet Nanda Strange "internal logical NA value has been modified" error Hervé Pagès Dev check runtime on all machines Shepherd, Lori End-of-life for predictionet Eeles, Christopher End-of-life for predictionet Nitesh Turaga Release 3.13 is frozen alan murphy Dev check runtime on all machines Nitesh Turaga Bioconductor Release 3.13 Code Freeze Hervé Pagès Failed to locate any version of JAGS version 4 Hervé Pagès Strange "internal logical NA value has been modified" error Shepherd, Lori Request GWAS.BAYES to be un-deprecated Jake Williams Request GWAS.BAYES to be un-deprecated Shepherd, Lori Final List of Deprecated Packages for Bioc3.14 iuke-tier@ey m@iii@g oii uiow@@edu Strange "internal logical NA value has been modified" error Martin Morgan Strange "internal logical NA value has been modified" error
Tuesday, October 12, 2021 14 emails
Hervé Pagès Regarding BioC devel build of package surfaltr Pariksheet Nanda Strange "internal logical NA value has been modified" error Pariksheet Nanda Strange "internal logical NA value has been modified" error Henrik Bengtsson Strange "internal logical NA value has been modified" error Dario Strbenac Windows-specific Function Not Found Error Martin Morgan Strange "internal logical NA value has been modified" error Martin Morgan Windows-specific Function Not Found Error Dario Strbenac Windows-specific Function Not Found Error Pariksheet Nanda Strange "internal logical NA value has been modified" error Hervé Pagès Regarding BioC devel build of package surfaltr Hervé Pagès Regarding BioC devel build of package surfaltr Zhi Yang Failed to locate any version of JAGS version 4 Hervé Pagès Failed to locate any version of JAGS version 4 Pooja Gangras Regarding BioC devel build of package surfaltr
Monday, October 11, 2021 1 email
Zhi Yang Failed to locate any version of JAGS version 4
Friday, October 8, 2021 3 emails
Nitesh Turaga hypeR Bioconductor package Bhattacharya, Surajit Regarding package IntramiRExploreR Shepherd, Lori Regarding package IntramiRExploreR
Thursday, October 7, 2021 2 emails
Bhattacharya, Surajit Regarding package IntramiRExploreR Shepherd, Lori Bioconductor Release 3.13 Code Freeze
Wednesday, October 6, 2021 6 emails
Nitesh Turaga Can't push to upstream for ToxicoGx Nitesh Turaga Can't push to upstream for ToxicoGx Chris Eeles Can't push to upstream for ToxicoGx Hervé Pagès Testthat problem - version info Felix Ernst Testthat problem - version info Jiefei Wang Looking for suggestions for BiocParallel
Tuesday, October 5, 2021 10 emails
Nitesh Turaga Don't have git access to my newly submitted git package Nitesh Turaga regain access to git repository Nitesh Turaga Reset package Nitesh Turaga Reset package Steve Lianoglou Don't have git access to my newly submitted git package matine rb Reset package matine rb Error when building a package Wang, Xutao Reset package Shepherd, Lori Deprecation of dualKS and Slinky packages Nitesh Turaga Don't have git access to my newly submitted git package
Monday, October 4, 2021 11 emails
Steve Lianoglou Don't have git access to my newly submitted git package Hervé Pagès Error when building a package Noah G. Hoffman regain access to git repository Nitesh Turaga Don't have git access to my newly submitted git package Nitesh Turaga access problems Nitesh Turaga Add maintainer to scruff and celda Hervé Pagès Error when building a package Kort, Eric Deprecation of dualKS and Slinky packages matine rb Error when building a package Wang, Zhe Add maintainer to scruff and celda Neumann, Steffen 3rd de.NBI/ELIXIR-DE metaRbolomics Hackathon 22.-24.11.2021 @ Wittenberg, Germany
Saturday, October 2, 2021 1 email
Vincent Carey Recent contribution processing
Friday, October 1, 2021 1 email
Steve Lianoglou Don't have git access to my newly submitted git package