Bioc-devel March 2023

[Bioc-devel] S4 Methods Documentation Convention Triggers Warnings

1 msg Mar 30

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Deepayan Sarkar S4 Methods Documentation Convention Triggers Warnings Mar 30, 2023

[Bioc-devel] httr::GET() problem downloading a ExperimentHub resource

5 msgs Mar 30

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Robert Castelo httr::GET() problem downloading a ExperimentHub resource Mar 29, 2023

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Martin Morgan httr::GET() problem downloading a ExperimentHub resource Mar 29, 2023

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Robert Castelo httr::GET() problem downloading a ExperimentHub resource Mar 29, 2023

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Martin Morgan httr::GET() problem downloading a ExperimentHub resource Mar 29, 2023

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Robert Castelo httr::GET() problem downloading a ExperimentHub resource Mar 30, 2023

[Bioc-devel] rowSums, colSums, rowMeans, colMeans generics moved from BiocGenerics to MatrixGenerics

1 msg Mar 29

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Hervé Pagès rowSums, colSums, rowMeans, colMeans generics moved from BiocGenerics to MatrixGenerics Mar 29, 2023

[Bioc-devel] Important Bioconductor Release Deadlines

1 msg Mar 29

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Shepherd, Lori Important Bioconductor Release Deadlines Mar 29, 2023

[Bioc-devel] I cannot log into my Bioconductor Git Credentials

2 msgs Mar 28

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Sara Stankiewicz I cannot log into my Bioconductor Git Credentials Mar 27, 2023

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Shepherd, Lori I cannot log into my Bioconductor Git Credentials Mar 28, 2023

[Bioc-devel] Push changes to release branch

3 msgs Mar 27

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matine rb Push changes to release branch Mar 27, 2023

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Jennifer Wokaty Push changes to release branch Mar 27, 2023

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matine rb Push changes to release branch Mar 27, 2023

[Bioc-devel] _R_CHECK_SUGGESTS_ONLY=true

1 msg Mar 27

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Jennifer Wokaty _R_CHECK_SUGGESTS_ONLY=true Mar 27, 2023

[Bioc-devel] Problem updating package

2 msgs Mar 27

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Sonia Tarazona Problem updating package Mar 27, 2023

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Shepherd, Lori Problem updating package Mar 27, 2023

[Bioc-devel] "Graphics API version mismatch": Devel package check on macOS failing

2 msgs Mar 27

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Sarvesh Nikumbh "Graphics API version mismatch": Devel package check on macOS failing Mar 27, 2023

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Jennifer Wokaty "Graphics API version mismatch": Devel package check on macOS failing Mar 27, 2023

[Bioc-devel] Deprecation of package chromswitch

2 msgs Mar 27

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Selin Jessa Deprecation of package chromswitch Mar 24, 2023

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Shepherd, Lori Deprecation of package chromswitch Mar 27, 2023

[Bioc-devel] Please deprecate NxtIRFcore

2 msgs Mar 27

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Alex Wong Please deprecate NxtIRFcore Mar 26, 2023

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Shepherd, Lori Please deprecate NxtIRFcore Mar 27, 2023

[Bioc-devel] New Package Submission Deadline this Friday for Bioconductor 3.17

1 msg Mar 27

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Shepherd, Lori New Package Submission Deadline this Friday for Bioconductor 3.17 Mar 27, 2023

[Bioc-devel] download stats not accessible

7 msgs Mar 26

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Luo Weijun download stats not accessible Mar 19, 2023

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Henrik Bengtsson download stats not accessible Mar 19, 2023

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Hervé Pagès download stats not accessible Mar 20, 2023

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Sarvesh Nikumbh download stats not accessible Mar 20, 2023

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Luo Weijun download stats not accessible Mar 21, 2023

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Hervé Pagès download stats not accessible Mar 22, 2023

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Luo Weijun download stats not accessible Mar 26, 2023

[Bioc-devel] surfaltr build on Bioc 3.17 error advice

6 msgs Mar 24

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Pooja Gangras surfaltr build on Bioc 3.17 error advice Mar 21, 2023

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Hervé Pagès surfaltr build on Bioc 3.17 error advice Mar 21, 2023

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Pooja Gangras surfaltr build on Bioc 3.17 error advice Mar 21, 2023

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Hervé Pagès surfaltr build on Bioc 3.17 error advice Mar 21, 2023

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Pooja Gangras surfaltr build on Bioc 3.17 error advice Mar 24, 2023

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Hervé Pagès surfaltr build on Bioc 3.17 error advice Mar 24, 2023

[Bioc-devel] Manifest and annotation packages for EPIC methylation array v2.0

3 msgs Mar 21

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Zuguang Gu Manifest and annotation packages for EPIC methylation array v2.0 Mar 18, 2023

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Shepherd, Lori Manifest and annotation packages for EPIC methylation array v2.0 Mar 21, 2023

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Zuguang Gu Manifest and annotation packages for EPIC methylation array v2.0 Mar 21, 2023

[Bioc-devel] Single Package Builder package dependency issue

2 msgs Mar 21

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Shepherd, Lori Single Package Builder package dependency issue Mar 20, 2023

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Shepherd, Lori Single Package Builder package dependency issue Mar 21, 2023

[Bioc-devel] Reopen cfTools issue #2608

5 msgs Mar 21

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RAN HU Reopen cfTools issue #2608 Mar 20, 2023

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Shepherd, Lori Reopen cfTools issue #2608 Mar 21, 2023

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RAN HU Reopen cfTools issue #2608 Mar 21, 2023

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Shepherd, Lori Reopen cfTools issue #2608 Mar 21, 2023

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RAN HU Reopen cfTools issue #2608 Mar 21, 2023

[Bioc-devel] Bioconductor 3.17 db0s, OrgDbs and TxDbs now available

1 msg Mar 21

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Interdonato, Kayla Bioconductor 3.17 db0s, OrgDbs and TxDbs now available Mar 21, 2023

[Bioc-devel] updating pathwayPCA: "permission denied (publickey)"

1 msg Mar 20

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Gabriel Odom updating pathwayPCA: "permission denied (publickey)" Mar 20, 2023

[Bioc-devel] Packages failing on macOS build system - recent updates to the build system?

2 msgs Mar 20

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Rainer Johannes Packages failing on macOS build system - recent updates to the build system? Mar 20, 2023

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Jennifer Wokaty Packages failing on macOS build system - recent updates to the build system? Mar 20, 2023

[Bioc-devel] mzR crashing R session

3 msgs Mar 16

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TYLER H WINTERMUTE mzR crashing R session Mar 15, 2023

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Laurent Gatto mzR crashing R session Mar 15, 2023

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Neumann, Steffen mzR crashing R session Mar 16, 2023

[Bioc-devel] Bioconductor 3.17 Release Schedule

1 msg Mar 13

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Shepherd, Lori Bioconductor 3.17 Release Schedule Mar 13, 2023

[Bioc-devel] Bioconductor will rename the default branch on `git.bioconductor.org` to `devel`

2 msgs Mar 8

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Maria.Doyle Bioconductor will rename the default branch on `git.bioconductor.org` to `devel` Mar 2, 2023

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Shepherd, Lori Bioconductor will rename the default branch on `git.bioconductor.org` to `devel` Mar 8, 2023

[Bioc-devel] WARNING: R CMD check exceeded 10 min requirement

2 msgs Mar 7

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Y-h. Taguchi WARNING: R CMD check exceeded 10 min requirement Mar 7, 2023

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Shepherd, Lori WARNING: R CMD check exceeded 10 min requirement Mar 7, 2023

[Bioc-devel] Fwd: TDbasedUFE problems reported in the Multiple platform build/check report for BioC 3.17

2 msgs Mar 7

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Y-h. Taguchi TDbasedUFE problems reported in the Multiple platform build/check report for BioC 3.17 Mar 7, 2023

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Jennifer Wokaty TDbasedUFE problems reported in the Multiple platform build/check report for BioC 3.17 Mar 7, 2023

[Bioc-devel] seqArchRplus build error on Linux

2 msgs Mar 6

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Sarvesh Nikumbh seqArchRplus build error on Linux Mar 6, 2023

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Jennifer Wokaty seqArchRplus build error on Linux Mar 6, 2023

[Bioc-devel] BiocViews for long read technology

2 msgs Mar 6

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Michael Love BiocViews for long read technology Mar 6, 2023

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Shepherd, Lori BiocViews for long read technology Mar 6, 2023

[Bioc-devel] Openssl is not available in netConnectHttps for importing remote BigWig files

3 msgs Mar 2

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Jennifer Wokaty Openssl is not available in netConnectHttps for importing remote BigWig files Mar 2, 2023

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Hervé Pagès Openssl is not available in netConnectHttps for importing remote BigWig files Mar 2, 2023

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Leonardo Collado Torres Openssl is not available in netConnectHttps for importing remote BigWig files Mar 2, 2023

[Bioc-devel] libsbml and libxml2 on palomino3 BBS

1 msg Mar 2

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Jennifer Wokaty libsbml and libxml2 on palomino3 BBS Mar 2, 2023

[Bioc-devel] News: EuroBioC2023 abstract submission is open!

1 msg Mar 1

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Maria.Doyle News: EuroBioC2023 abstract submission is open! Mar 1, 2023