Bioc-devel October 2024

[Bioc-devel] arrow dependent packages fail to build on macOS

3 msgs Oct 31

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Edward Zhao arrow dependent packages fail to build on macOS Oct 23, 2024

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Hervé Pagès arrow dependent packages fail to build on macOS Oct 30, 2024

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Edward Zhao arrow dependent packages fail to build on macOS Oct 31, 2024

[Bioc-devel] Bioconductor 3.20 is Released!

1 msg Oct 30

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Shepherd, Lori Bioconductor 3.20 is Released! Oct 30, 2024

[Bioc-devel] RELEASE_3_20 branch is now available and push access is re-enabled

1 msg Oct 29

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Shepherd, Lori RELEASE_3_20 branch is now available and push access is re-enabled Oct 29, 2024

[Bioc-devel] Last day to make commits before Bioconductor RELEASE 3.20

2 msgs Oct 29

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Samuel Granjeaud IR/Inserm Last day to make commits before Bioconductor RELEASE 3.20 Oct 29, 2024

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Shepherd, Lori Last day to make commits before Bioconductor RELEASE 3.20 Oct 29, 2024

[Bioc-devel] All commits to Bioconductor stopped from 7:00 am ET for release

1 msg Oct 29

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Shepherd, Lori All commits to Bioconductor stopped from 7:00 am ET for release Oct 29, 2024

[Bioc-devel] groHMM problems reported in the Multiple platform build/check report for BioC 3.20

4 msgs Oct 28

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Tulip Nandu groHMM problems reported in the Multiple platform build/check report for BioC 3.20 Oct 24, 2024

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Marcel Ramos groHMM problems reported in the Multiple platform build/check report for BioC 3.20 Oct 24, 2024

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Tulip Nandu groHMM problems reported in the Multiple platform build/check report for BioC 3.20 Oct 28, 2024

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Marcel Ramos groHMM problems reported in the Multiple platform build/check report for BioC 3.20 Oct 28, 2024

[Bioc-devel] Issue with keras/tensorflow

1 msg Oct 28

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Nick Borcherding Issue with keras/tensorflow Oct 28, 2024

[Bioc-devel] Policies regarding forked packages

1 msg Oct 28

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Ali Sajid Imami Policies regarding forked packages Oct 28, 2024

[Bioc-devel] Last day to make commits before Bioconductor RELEASE 3.20

1 msg Oct 28

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Shepherd, Lori Last day to make commits before Bioconductor RELEASE 3.20 Oct 28, 2024

[Bioc-devel] WARNING on builders from rgl package

3 msgs Oct 28

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Matteo Tiberti WARNING on builders from rgl package Oct 25, 2024

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Martin Grigorov WARNING on builders from rgl package Oct 25, 2024

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Matteo Tiberti WARNING on builders from rgl package Oct 28, 2024

[Bioc-devel] DeepTarget error built in Linux (openEuler 22.03 LTS-SP1) / aarch64

3 msgs Oct 25

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Nguyen, Trinh (NIH/NCI) [C] DeepTarget error built in Linux (openEuler 22.03 LTS-SP1) / aarch64 Oct 25, 2024

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Martin Grigorov DeepTarget error built in Linux (openEuler 22.03 LTS-SP1) / aarch64 Oct 25, 2024

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Nguyen, Trinh (NIH/NCI) [C] DeepTarget error built in Linux (openEuler 22.03 LTS-SP1) / aarch64 Oct 25, 2024

[Bioc-devel] Announcing the GBCC2025 Logo Design Contest!

1 msg Oct 25

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Maria.Doyle Announcing the GBCC2025 Logo Design Contest! Oct 25, 2024

[Bioc-devel] Important Bioconductor Release 3.20

1 msg Oct 25

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Shepherd, Lori Important Bioconductor Release 3.20 Oct 25, 2024

[Bioc-devel] ANCOMBC Package Error on Kunpeng2 Platform

9 msgs Oct 25

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Huang Lin (Frederick) ANCOMBC Package Error on Kunpeng2 Platform Oct 22, 2024

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Shepherd, Lori ANCOMBC Package Error on Kunpeng2 Platform Oct 22, 2024

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Martin Grigorov ANCOMBC Package Error on Kunpeng2 Platform Oct 22, 2024

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Oleksii Nikolaienko ANCOMBC Package Error on Kunpeng2 Platform Oct 22, 2024

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Martin Grigorov ANCOMBC Package Error on Kunpeng2 Platform Oct 23, 2024

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Oleksii Nikolaienko ANCOMBC Package Error on Kunpeng2 Platform Oct 23, 2024

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Oleksii Nikolaienko ANCOMBC Package Error on Kunpeng2 Platform Oct 24, 2024

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Martin Grigorov ANCOMBC Package Error on Kunpeng2 Platform Oct 25, 2024

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Oleksii Nikolaienko ANCOMBC Package Error on Kunpeng2 Platform Oct 25, 2024

[Bioc-devel] Error on palomino8

2 msgs Oct 24

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Oleksii Nikolaienko Error on palomino8 Oct 23, 2024

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Hervé Pagès Error on palomino8 Oct 24, 2024

[Bioc-devel] BayesSpace maintainership

3 msgs Oct 23

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Matthew Stone BayesSpace maintainership Oct 22, 2024

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CoreTeam Bioconductor BayesSpace maintainership Oct 23, 2024

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Edward Zhao BayesSpace maintainership Oct 23, 2024

[Bioc-devel] Guidance on Creating an Annotation Package for Heterorhabditis bacteriophora

2 msgs Oct 23

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KABILAN S Guidance on Creating an Annotation Package for Heterorhabditis bacteriophora Oct 23, 2024

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James W. MacDonald Guidance on Creating an Annotation Package for Heterorhabditis bacteriophora Oct 23, 2024

[Bioc-devel] Kunpeng2 compilation error -lopenblas

3 msgs Oct 23

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Morgan, Michael Kunpeng2 compilation error -lopenblas Oct 23, 2024

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Martin Grigorov Kunpeng2 compilation error -lopenblas Oct 23, 2024

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Morgan, Michael Kunpeng2 compilation error -lopenblas Oct 23, 2024

[Bioc-devel] groHMM problems reported in the Multiple platform build/check report for BioC 3.20

1 msg Oct 22

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Tulip Nandu groHMM problems reported in the Multiple platform build/check report for BioC 3.20 Oct 22, 2024

[Bioc-devel] Important Bioconductor Release 3.20 deadlines this week

1 msg Oct 21

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Shepherd, Lori Important Bioconductor Release 3.20 deadlines this week Oct 21, 2024

[Bioc-devel] List of Deprecated Packages for Bioc3.20

1 msg Oct 21

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Shepherd, Lori List of Deprecated Packages for Bioc3.20 Oct 21, 2024

[Bioc-devel] 3 unit tests skipped for CytoPipeline package on Bioc devel

3 msgs Oct 20

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Philippe Hauchamps 3 unit tests skipped for CytoPipeline package on Bioc devel Oct 17, 2024

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Martin Morgan 3 unit tests skipped for CytoPipeline package on Bioc devel Oct 19, 2024

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Philippe Hauchamps 3 unit tests skipped for CytoPipeline package on Bioc devel Oct 20, 2024

[Bioc-devel] Opportunity in Brazil for Carpentries Instructors and Bioconductor Presenters!

1 msg Oct 18

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Maria.Doyle Opportunity in Brazil for Carpentries Instructors and Bioconductor Presenters! Oct 18, 2024

[Bioc-devel] ChemmineOB build failures

4 msgs Oct 17

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Jennifer Wokaty ChemmineOB build failures Oct 1, 2024

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Kevin Horan ChemmineOB build failures Oct 1, 2024

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Kevin Horan ChemmineOB build failures Oct 17, 2024

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Jennifer Wokaty ChemmineOB build failures Oct 17, 2024

[Bioc-devel] Review status of BulkSignalR

2 msgs Oct 17

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Jean-Philippe Villemin Review status of BulkSignalR Oct 17, 2024

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Shepherd, Lori Review status of BulkSignalR Oct 17, 2024

[Bioc-devel] Release_3_19 branch is now frozen

1 msg Oct 15

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Shepherd, Lori Release_3_19 branch is now frozen Oct 15, 2024

[Bioc-devel] Bioconductor CoC committee elections

1 msg Oct 15

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Anna Quaglieri Bioconductor CoC committee elections Oct 15, 2024

[Bioc-devel] EpiCompare - Transfer maintainer

2 msgs Oct 15

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Tom EpiCompare - Transfer maintainer Oct 15, 2024

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Shepherd, Lori EpiCompare - Transfer maintainer Oct 15, 2024

[Bioc-devel] RELEASE_3_19 branch frozen in a few hours

1 msg Oct 15

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Shepherd, Lori RELEASE_3_19 branch frozen in a few hours Oct 15, 2024

[Bioc-devel] OrgDB entry for Homo sapiens and Mus musculus missing in AnnotationHub

3 msgs Oct 14

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Alex Wong OrgDB entry for Homo sapiens and Mus musculus missing in AnnotationHub Oct 12, 2024

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Shepherd, Lori OrgDB entry for Homo sapiens and Mus musculus missing in AnnotationHub Oct 14, 2024

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Shepherd, Lori OrgDB entry for Homo sapiens and Mus musculus missing in AnnotationHub Oct 14, 2024

[Bioc-devel] Important Release Deadline RELEASE_3_19 Freeze

1 msg Oct 14

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Shepherd, Lori Important Release Deadline RELEASE_3_19 Freeze Oct 14, 2024

[Bioc-devel] registering on git as multtest package maintainer

2 msgs Oct 10

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Katie Pollard registering on git as multtest package maintainer Oct 10, 2024

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Shepherd, Lori registering on git as multtest package maintainer Oct 10, 2024

[Bioc-devel] pkgdown::build_site_github_pages fails with "Quarto articles require Bootstrap 5"

5 msgs Oct 10

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Oleksii Nikolaienko pkgdown::build_site_github_pages fails with "Quarto articles require Bootstrap 5" Oct 10, 2024

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Jacques Serizay pkgdown::build_site_github_pages fails with "Quarto articles require Bootstrap 5" Oct 10, 2024

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Louis Le Nézet pkgdown::build_site_github_pages fails with "Quarto articles require Bootstrap 5" Oct 10, 2024

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Oleksii Nikolaienko pkgdown::build_site_github_pages fails with "Quarto articles require Bootstrap 5" Oct 10, 2024

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Oleksii Nikolaienko pkgdown::build_site_github_pages fails with "Quarto articles require Bootstrap 5" Oct 10, 2024

[Bioc-devel] file 'HilbertCurve/DESCRIPTION' does not exist

3 msgs Oct 8

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Jennifer Wokaty file 'HilbertCurve/DESCRIPTION' does not exist Oct 8, 2024

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Henrik Bengtsson file 'HilbertCurve/DESCRIPTION' does not exist Oct 8, 2024

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Zuguang Gu file 'HilbertCurve/DESCRIPTION' does not exist Oct 8, 2024

[Bioc-devel] Symbolic links to ExperimentHub files on Windows

1 msg Oct 8

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Shepherd, Lori Symbolic links to ExperimentHub files on Windows Oct 8, 2024

[Bioc-devel] commit access

3 msgs Oct 7

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Atul Deshpande commit access Oct 4, 2024

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Shepherd, Lori commit access Oct 7, 2024

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Dmitrijs Lvovs commit access Oct 7, 2024

[Bioc-devel] Connection timed out error with push to Bioconductor Git server

2 msgs Oct 4

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Richard Heery Connection timed out error with push to Bioconductor Git server Oct 4, 2024

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Shepherd, Lori Connection timed out error with push to Bioconductor Git server Oct 4, 2024

[Bioc-devel] CatsCradle, recently accepted package

2 msgs Oct 2

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Michael Shapiro CatsCradle, recently accepted package Oct 2, 2024

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Shepherd, Lori CatsCradle, recently accepted package Oct 2, 2024

[Bioc-devel] Review status of CARDspa package

2 msgs Oct 1

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Jing Fu Review status of CARDspa package Oct 1, 2024

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Shepherd, Lori Review status of CARDspa package Oct 1, 2024

[Bioc-devel] New Contribution Trouble with Git/GitHub

2 msgs Oct 1

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Shepherd, Lori New Contribution Trouble with Git/GitHub Oct 1, 2024

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Sagendorf, Tyler J New Contribution Trouble with Git/GitHub Oct 1, 2024

[Bioc-devel] Add additional maintainer to R package

1 msg Oct 1

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Shepherd, Lori Add additional maintainer to R package Oct 1, 2024