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Bioc-devel March 2025

Thread Subject Author Date
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Monday, March 31, 2025 8 emails
RAN HU Build error for cfTools Shepherd, Lori Build error for cfTools RAN HU Build error for cfTools Shepherd, Lori Release_3_20 branch is now frozen Martin Maechler Author ORCID IDs on package landing pages Shepherd, Lori RELEASE_3_20 frozen in a few hours Shepherd, Lori Add second maintainer for strandCheckR Shepherd, Lori List of Deprecated Packages for Bioc3.21
Sunday, March 30, 2025 1 email
Stevie Pederson Add second maintainer for strandCheckR
Saturday, March 29, 2025 1 email
Lluís Revilla List of Deprecated Packages for Bioc3.21
Friday, March 28, 2025 2 emails
Shepherd, Lori Author ORCID IDs on package landing pages Shepherd, Lori segmentSeq problems reported for BioC 3.20 but not BioC 3.21: is there a need to change the code?
Thursday, March 27, 2025 8 emails
Gordon K Smyth Author ORCID IDs on package landing pages Gordon K Smyth Author ORCID IDs on package landing pages Samuel Granjeaud IR/Inserm segmentSeq problems reported for BioC 3.20 but not BioC 3.21: is there a need to change the code? Robert Castelo mail notification support forum stopped Shepherd, Lori List of Deprecated Packages for Bioc3.21 Martin Grigorov Package Installation Fails on Linux Kunpeng2 Due to ‘concaveman’ and ‘sf’ Dependencies Martin Grigorov Package Installation Fails on Linux Kunpeng2 Due to ‘concaveman’ and ‘sf’ Dependencies Martin Grigorov Package Installation Fails on Linux Kunpeng2 Due to ‘concaveman’ and ‘sf’ Dependencies
Wednesday, March 26, 2025 5 emails
Martin Grigorov Package Installation Fails on Linux Kunpeng2 Due to ‘concaveman’ and ‘sf’ Dependencies Jing Fu Package Installation Fails on Linux Kunpeng2 Due to ‘concaveman’ and ‘sf’ Dependencies Shepherd, Lori Important Release Deadline RELEASE_3_20 Freeze and API Feature Freeze of devel James W. MacDonald mail notification support forum stopped Hooiveld, Guido mail notification support forum stopped
Tuesday, March 25, 2025 5 emails
Luca Lepore failing with non-reproducible error "no slot of name "name" for this object of class "pEdge"" from Rgraphviz James W. MacDonald failing with non-reproducible error "no slot of name "name" for this object of class "pEdge"" from Rgraphviz Hervé Pagès failing with non-reproducible error "no slot of name "name" for this object of class "pEdge"" from Rgraphviz Tulip Nandu groHMM Bioconductor Maria.Doyle GBCC2025: Upcoming Deadlines for Early Bird Registration, Abstract Submission, and Scholarships
Monday, March 24, 2025 5 emails
Andrew McDavid failing with non-reproducible error "no slot of name "name" for this object of class "pEdge"" from Rgraphviz Andrew McDavid failing with non-reproducible error "no slot of name "name" for this object of class "pEdge"" from Rgraphviz Kasper Daniel Hansen failing with non-reproducible error "no slot of name "name" for this object of class "pEdge"" from Rgraphviz Shepherd, Lori Add second maintainer for limpa package Andrew McDavid failing with non-reproducible error "no slot of name "name" for this object of class "pEdge"" from Rgraphviz
Sunday, March 23, 2025 1 email
Meriem Bahda New version of rmspc - error
Saturday, March 22, 2025 1 email
Gordon K Smyth Add second maintainer for limpa package
Friday, March 21, 2025 1 email
Andres Wokaty New version of rmspc - error
Thursday, March 20, 2025 3 emails
Lluís Revilla Bioconductor archive? Shepherd, Lori autonomics current release: to fix or not ? @dity@@bh@gw@t m@iii@g oii u@i-m@rburg@de autonomics current release: to fix or not ?
Wednesday, March 19, 2025 5 emails
Sean Davis Bioconductor archive? Lluís Revilla Bioconductor archive? Ramon Diaz-Uriarte failing with non-reproducible error "no slot of name "name" for this object of class "pEdge"" from Rgraphviz Robert Castelo failing with non-reproducible error "no slot of name "name" for this object of class "pEdge"" from Rgraphviz Luca Lepore failing with non-reproducible error "no slot of name "name" for this object of class "pEdge"" from Rgraphviz
Tuesday, March 18, 2025 9 emails
Meriem Bahda New version of rmspc - error Meriem Bahda New version of rmspc - error Leonardo Collado Torres Readme in Rmd and md formats; .Rbuildignore'd files Kasper Daniel Hansen failing with non-reproducible error "no slot of name "name" for this object of class "pEdge"" from Rgraphviz Andres Wokaty New version of rmspc - error Charlotte Soneson EBSeq Installation Error – C++ Version Update Katja Danielzik C++ compiler error on kunpeng2 ? Robert Castelo failing with non-reproducible error "no slot of name "name" for this object of class "pEdge"" from Rgraphviz Jonas Schuck BiocParallel Error in SingleCellAlleleExperiment on palomino7/8
Monday, March 17, 2025 7 emails
Shepherd, Lori Important Bioconductor Release Deadlines xiuyu EBSeq Installation Error – C++ Version Update Kasper Daniel Hansen failing with non-reproducible error "no slot of name "name" for this object of class "pEdge"" from Rgraphviz Martin Grigorov New version of rmspc - error Shepherd, Lori Important Bioconductor Release Deadlines Shepherd, Lori Adding new maintainer to package TFEA.ChIP Shepherd, Lori Bioconductor archive?
Sunday, March 16, 2025 2 emails
Laura Puente Santamaría Adding new maintainer to package TFEA.ChIP Meriem Bahda New version of rmspc - error
Saturday, March 15, 2025 3 emails
Oleksii Nikolaienko possible ld issues at palomino7 Lluís Revilla Bioconductor archive? Lluís Revilla Readme in Rmd and md formats; .Rbuildignore'd files
Friday, March 14, 2025 4 emails
Marcel Ramos Readme in Rmd and md formats; .Rbuildignore'd files Shepherd, Lori Adding new maintainer to package TFEA.ChIP Lluís Revilla Readme in Rmd and md formats; .Rbuildignore'd files Robert Castelo failing with non-reproducible error "no slot of name "name" for this object of class "pEdge"" from Rgraphviz
Thursday, March 13, 2025 5 emails
Scott McLoud Microshades: Appropriate for BioConductor Kasper Daniel Hansen failing with non-reproducible error "no slot of name "name" for this object of class "pEdge"" from Rgraphviz Robert Castelo failing with non-reproducible error "no slot of name "name" for this object of class "pEdge"" from Rgraphviz Shepherd, Lori New version of rmspc - error Laura Puente Santamaría Adding new maintainer to package TFEA.ChIP
Wednesday, March 12, 2025 1 email
Meriem Bahda New version of rmspc - error
Tuesday, March 11, 2025 5 emails
Marcel Ramos Readme in Rmd and md formats; .Rbuildignore'd files Shepherd, Lori Bioconductor 3.21 db0s, OrgDbs, and TxDbs now available Shepherd, Lori Important Bioconductor Release Deadlines Martha M Readme in Rmd and md formats; .Rbuildignore'd files Leonardo Collado Torres Readme in Rmd and md formats; .Rbuildignore'd files
Monday, March 10, 2025 5 emails
Martin Grigorov C++ compiler error on kunpeng2 ? Martin Grigorov C++ compiler error on kunpeng2 ? Shepherd, Lori PRONE Release Branch RELEASE_3_20 Not Updating Katja Danielzik C++ compiler error on kunpeng2 ? Lisi Arend PRONE Release Branch RELEASE_3_20 Not Updating
Friday, March 7, 2025 1 email
Maria.Doyle GBCC2025: Expression of Interest for Training Topics
Thursday, March 6, 2025 4 emails
Ramon Diaz-Uriarte failing with non-reproducible error "no slot of name "name" for this object of class "pEdge"" from Rgraphviz Alexander Blume How to provide hotfix for current release Shepherd, Lori How to provide hotfix for current release Shepherd, Lori Error during download data by GDCquery_clinic
Wednesday, March 5, 2025 2 emails
Shepherd, Lori Bioconductor 3.21 Release Schedule Laurent Gatto S4Vectors installation error: no setequal S4 generic
Tuesday, March 4, 2025 2 emails
Stephanie Hicks Deprecating benchmarkfdrData2019 ExperimentHub package Sun Wenjie Rust compilation environment in Bioconductor
Monday, March 3, 2025 8 emails
Andres Wokaty Rust compilation environment in Bioconductor Sun Wenjie Rust compilation environment in Bioconductor Alexander Blume How to provide hotfix for current release Shepherd, Lori Issue with devel package Shreyan Gupta Issue with devel package James W. MacDonald How to provide hotfix for current release Alexander Blume How to provide hotfix for current release Jarosław Sikora Error during download data by GDCquery_clinic