[Bioc-devel] Vignettes location in BiocCheck vs R CMD check
Put the bib file in /vignettes. Perhaps see a couple of packages for examples, including how to use BiocStyle
On Mon, Jan 29, 2018 at 3:26 PM, Armen Abnousi <a.abnousi at gmail.com> wrote:
Thanks for your answers, that helped but now there is another issue. The vignette in vignettes/ directory is referring to a bib file for references. The bib file is in the inst/ directory (so I have used ../inst/REFERENCES.bib) to point to it. I don't get any warnings on my Linux computer when running check and BiocCheck. But when I submit the package it builds on Mac OS with no errors but on Linux it gives the error Error in loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]]) : there is no package called bibtex Is this related to my referencing to the bib file? How could I solve this issue. I appreciate your help. Thanks! On Mon, Jan 29, 2018 at 11:49 AM, Diego Morais <arthur.vinx at gmail.com> wrote:
Hello, Armen. Your vignettes should be located in <packagename> / vignettes. The vignette will be built automatically later. 2018-01-29 16:41 GMT-03:00 Armen Abnousi <a.abnousi at gmail.com>:
Hi, I'm trying to submit my first package. but I'm confused about the
location
of the vignettes in my submitted package. It seems like BiocCheck is expecting the vignettes to go in <packagename>/vignettes directory but R 3.2+ expects them to go in <packagename>/inst/doc directory. Wherever I put them, one of the checks complains about their location. Can't put them
in
both directories either.
Thanks,
Armen
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