[Bioc-devel] Error when building in command line but not in RStudio
On 3/25/21 1:50 PM, AJ Kinstlick wrote:
Any help on this would be greatly appreciated, but once again I'm not sure it's even necessary if I can just build the package in RStudio and submit it to Bioconductor.
That's not how Bioconductor works. With Bioconductor packages you push changes to your package git repo at https://git.bioconductor.org/packages/seq2pathway and we do the rest. Of course 'R CMD build' needs to work on your package because that's what the daily builds are going to do to produce the source tarball. The daily build/check report for BioC 3.13 is published here: https://bioconductor.org/checkResults/3.13/bioc-LATEST/ Note that seq2pathway is currently broken on nebbiolo1 (Linux builder). Maybe that is the same error that you are seeing when you do 'R CMD build seq2pathway' on your own machine? H.
Thank you, AJ Kinstlick [[alternative HTML version deleted]]
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