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Bioc-devel March 2021

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Wednesday, March 31, 2021 3 emails
Triche, Tim BFG cleanup on `spiky` repo (under submission) Robert Castelo missing GenomicScores platform availability shield for release Stian Lågstad Need help figuring out GeometryDoesNotContainImage-error on machv2-build for chimeraviz
Tuesday, March 30, 2021 1 email
Hervé Pagès Need help figuring out GeometryDoesNotContainImage-error on machv2-build for chimeraviz
Monday, March 29, 2021 1 email
Nitesh Turaga Account Activation @ Bioconductor Git Credentials
Sunday, March 28, 2021 2 emails
Dan Du Account Activation @ Bioconductor Git Credentials James Perkins devel builds are down
Friday, March 26, 2021 5 emails
Hervé Pagès Package failed build on Windows - couldn't load related ExperimentHub dataset Murphy, Alan E Package failed build on Windows - couldn't load related ExperimentHub dataset Hervé Pagès devel builds are down Hervé Pagès Package failed build on Windows - couldn't load related ExperimentHub dataset Murphy, Alan E Package failed build on Windows - couldn't load related ExperimentHub dataset
Thursday, March 25, 2021 13 emails
Hervé Pagès Error when building in command line but not in RStudio Hervé Pagès Package failed build on Windows - couldn't load related ExperimentHub dataset Hervé Pagès Error when building in command line but not in RStudio AJ Kinstlick Error when building in command line but not in RStudio Raymond Cavalcante Please change maintainer of chipenrich and chipenrich.data packages Nitesh Turaga Please change maintainer of chipenrich and chipenrich.data packages Nitesh Turaga Please change maintainer of chipenrich and chipenrich.data packages Nitesh Turaga Please change maintainer of chipenrich and chipenrich.data packages Nitesh Turaga Please change maintainer of chipenrich and chipenrich.data packages Raymond Cavalcante Please change maintainer of chipenrich and chipenrich.data packages Martin Morgan autonomics DOI link inactive Bhagwat, Aditya autonomics DOI link inactive Murphy, Alan E Package failed build on Windows - couldn't load related ExperimentHub dataset
Wednesday, March 24, 2021 5 emails
Hervé Pagès devel builds are down James Perkins devel builds are down Hervé Pagès devel builds are down Nitesh Turaga adding maintainers to SpatialExperiment repo Shepherd, Lori No updates on Bioconductor landing page after making changes to package and bumping package version
Tuesday, March 23, 2021 20 emails
Xin Wang No updates on Bioconductor landing page after making changes to package and bumping package version Hervé Pagès ChIPseeker failing on r-devel on CRAN checks Lukas Weber adding maintainers to SpatialExperiment repo Onur Karakaslar ChIPseeker failing on r-devel on CRAN checks Lukas Weber adding maintainers to SpatialExperiment repo Hervé Pagès Methods to speed up R CMD Check Murphy, Alan E Methods to speed up R CMD Check Dario Righelli adding maintainers to SpatialExperiment repo Hervé Pagès Methods to speed up R CMD Check Murphy, Alan E Methods to speed up R CMD Check Hervé Pagès Methods to speed up R CMD Check Murphy, Alan E Methods to speed up R CMD Check Hervé Pagès Methods to speed up R CMD Check Hervé Pagès Methods to speed up R CMD Check Mike Smith Methods to speed up R CMD Check James Perkins Recently accepted package not appearing in nightly builds Murphy, Alan E Methods to speed up R CMD Check Shepherd, Lori Recently accepted package not appearing in nightly builds James Perkins Recently accepted package not appearing in nightly builds Mike Smith EXTERNAL: Resolve mismatch between master and release branches
Monday, March 22, 2021 12 emails
Nitesh Turaga Question with push to remote repository Marcel Ramos EXTERNAL: Resolve mismatch between master and release branches Sarah Voisin Resolve mismatch between master and release branches Dan Guo May 3 – May 14, 2021, online: May Institute on computation and statistics for mass spectrometry and proteomics Nitesh Turaga Question with push to remote repository Harmon, Lauren Question with push to remote repository Martin Morgan Methods to speed up R CMD Check Hervé Pagès Methods to speed up R CMD Check Martin Morgan Methods to speed up R CMD Check Nitesh Turaga Bioconductor Git Credentials error Shepherd, Lori Methods to speed up R CMD Check Murphy, Alan E Methods to speed up R CMD Check
Sunday, March 21, 2021 1 email
raman sethi Bioconductor Git Credentials error
Saturday, March 20, 2021 1 email
Nitesh Turaga Bioconductor Git Credentials error
Friday, March 19, 2021 5 emails
raman sethi Bioconductor Git Credentials error Nitesh Turaga Bioconductor Git Credentials error Thomas Girke is it possible to disable i386 builds on bioconductor Hervé Pagès is it possible to disable i386 builds on bioconductor Hervé Pagès devel builds are down
Wednesday, March 17, 2021 2 emails
raman sethi Bioconductor Git Credentials error Thomas Girke is it possible to disable i386 builds on bioconductor
Tuesday, March 16, 2021 5 emails
Hervé Pagès is it possible to disable i386 builds on bioconductor Samman Mahmoud We are working on a bioinformatics project and we need help from you Marcel Ramos EXTERNAL: %>%.html': Invalid argument Multiple platform Hervé Pagès is it possible to disable i386 builds on bioconductor Mike Smith Bioconductor Developers Forum - 18th March
Monday, March 15, 2021 3 emails
Thomas Girke is it possible to disable i386 builds on bioconductor Kevin Horan is it possible to disable i386 builds on bioconductor Hervé Pagès is it possible to disable i386 builds on bioconductor
Sunday, March 14, 2021 1 email
Hervé Pagès rfaRm suddenly failing on all platforms
Saturday, March 13, 2021 1 email
Selles Vidal, Lara rfaRm suddenly failing on all platforms
Friday, March 12, 2021 2 emails
Thomas Girke is it possible to disable i386 builds on bioconductor Michael Morgan Vignette build fail on Windows: cannot open connection
Thursday, March 11, 2021 4 emails
stefano iacus %>%.html': Invalid argument Multiple platform Hervé Pagès Warnings on R CMD check on Mac OS and Linux Oluwafemi OLUSOJI Warnings on R CMD check on Mac OS and Linux Oluwafemi OLUSOJI Warnings on R CMD check on Mac OS and Linux
Wednesday, March 10, 2021 10 emails
Hervé Pagès Warnings on R CMD check on Mac OS and Linux Hervé Pagès download stats problem stefano iacus Bioconductor Permission denied (publickey). Luo Weijun download stats problem Laurent Gatto bioconductor_docker:devel missing MAE and GenomeInfoDb Marcel Ramos bioconductor_docker:devel missing MAE and GenomeInfoDb Laurent Gatto bioconductor_docker:devel missing MAE and GenomeInfoDb Robert Castelo bioconductor_docker:devel missing MAE and GenomeInfoDb Nitesh Turaga bioconductor_docker:devel missing MAE and GenomeInfoDb Shepherd, Lori Bioconductor Permission denied (publickey).
Tuesday, March 9, 2021 15 emails
stefano iacus Bioconductor Permission denied (publickey). stefano iacus False positive BiocCheck? Packages providing 5 object(s) used in this package should be imported in the NAMESPACE Reto Gerber docker build failure when installing dependencies Martin Morgan False positive BiocCheck? Packages providing 5 object(s) used in this package should be imported in the NAMESPACE stefano iacus False positive BiocCheck? Packages providing 5 object(s) used in this package should be imported in the NAMESPACE Catherine Ross Cytoscape installed on bioc builders? Laurent Gatto bioconductor_docker:devel missing MAE and GenomeInfoDb Vincent Carey docker build failure when installing dependencies Levi Waldron BioC2021 abstract/syllabus submissions Nitesh Turaga docker build failure when installing dependencies Reto Gerber docker build failure when installing dependencies Nitesh Turaga Removal of large items in git history - BiocCheck warning Murphy, Alan E Removal of large items in git history - BiocCheck warning Mike Smith Removal of large items in git history - BiocCheck warning Murphy, Alan E Removal of large items in git history - BiocCheck warning
Monday, March 8, 2021 6 emails
Oluwafemi OLUSOJI Warnings on R CMD check on Mac OS and Linux Nitesh Turaga Warnings on R CMD check on Mac OS and Linux Oluwafemi OLUSOJI Warnings on R CMD check on Mac OS and Linux stefano iacus Removal of large items in git history - BiocCheck warning Nitesh Turaga Removal of large items in git history - BiocCheck warning Shepherd, Lori List of Deprecated Packages Bioc 3.13
Sunday, March 7, 2021 1 email
Kozo Nishida What should I do if I need to ask my package to be deprecated?
Saturday, March 6, 2021 3 emails
Tao-2, W. (Weiyang) RegEnrich problems reported in the Multiple platform build/check report for BioC 3.12 Kozo Nishida Cytoscape installed on bioc builders? Shepherd, Lori including package in github
Friday, March 5, 2021 3 emails
xin wwa including package in github Robert M. Flight Cytoscape installed on bioc builders? Catherine Ross Cytoscape installed on bioc builders?
Thursday, March 4, 2021 3 emails
Murphy, Alan E Removal of large items in git history - BiocCheck warning Shepherd, Lori RegEnrich problems reported in the Multiple platform build/check report for BioC 3.12 顾祖光 Moving minfi classes definition to a lighter package
Wednesday, March 3, 2021 11 emails
Tao-2, W. (Weiyang) RegEnrich problems reported in the Multiple platform build/check report for BioC 3.12 Shepherd, Lori ClusterJudge problems reported in the build/check Adrian Pasculescu ClusterJudge problems reported in the build/check 顾祖光 Vignette compression Robert Castelo Moving minfi classes definition to a lighter package Vincent Carey Moving minfi classes definition to a lighter package Fabricio de Almeida Vignette compression Fabricio de Almeida Vignette compression Kasper Daniel Hansen Moving minfi classes definition to a lighter package Murphy, Alan E ExperimentHub package development - Windows OS specific error Gavin Lloyd ExperimentHub package development - Windows OS specific error
Tuesday, March 2, 2021 21 emails
Martin Morgan Accessing updated package through Devel and priming package for next release Tim Nieuwenhuis Accessing updated package through Devel and priming package for next release P. Palenikova Semi-transparency warning in package submitted to Bioconductor Murphy, Alan E ExperimentHub package development - Windows OS specific error Vincent Carey Remotes in DESCRIPTION not supported for BioC? Henrik Bengtsson Remotes in DESCRIPTION not supported for BioC? Gavin Lloyd ExperimentHub package development - Windows OS specific error Murphy, Alan E ExperimentHub package development - Windows OS specific error Morganella Sandro Lost Credentials Nitesh Turaga Lost Credentials Morganella Sandro Lost Credentials Oluwafemi OLUSOJI Error on BiocCheckGitClone and Windows build Shepherd, Lori Check package status / built report Shepherd, Lori Check package status / built report Shepherd, Lori Error on BiocCheckGitClone and Windows build Rainer Johannes Remotes in DESCRIPTION not supported for BioC? Shepherd, Lori Remotes in DESCRIPTION not supported for BioC? Oluwafemi OLUSOJI Error on BiocCheckGitClone and Windows build Rainer Johannes Remotes in DESCRIPTION not supported for BioC? Stadler, Michael Check package status / built report Ines de Santiago Check package status / built report
Monday, March 1, 2021 4 emails
Michael Lawrence git permissions Shepherd, Lori Error on BiocCheckGitClone and Windows build Carlos Ruiz Moving minfi classes definition to a lighter package Oluwafemi OLUSOJI Error on BiocCheckGitClone and Windows build