[Bioc-devel] remove history vignettes

Hi,

I have the same problem with changes I recently made in the devel
branch of `derfinder`. The old vignettes were compiled the last time
on November 4th and the new ones on November 12th. Maybe in the next
1-2 days (with the Wednesday nightly build) the old ones will be
dropped.

Cheers,
Leo


On Tue, Nov 17, 2015 at 11:28 AM, Gabe Becker <becker.gabe at gene.com>
wrote:

Well, You shouldn't expect the release branches to change at all based on
anything you do on trunk. They never will.

The release branch is (almost completely frozen), you shouldn't be making
changes there generally. Changes in documentation are a grey area, I
suppose, but I try to avoid those as well. Basically, once released the
package should be "as-is", and exactly the same for all people using it

at

any point in that release cycle.

I'm not sure why the vignettes are still there on the devel landing page

if

you have in fact bumped the package version in svn though. That likely
comes down to exactly how those splash pages are generated, which I don't
know.

Best,
~G

On Tue, Nov 17, 2015 at 8:23 AM, ??? <jokergoo at gmail.com> wrote:

Thanks for your reply! I have already updated the package (also with
bumping version numbers) for many times but these old vignettes are

still

there. They even exist in the release branch:

http://www.bioconductor.org/packages/release/bioc/html/ComplexHeatmap.html

On Tue, Nov 17, 2015 at 3:44 PM, Gabe Becker <becker.gabe at gene.com>

wrote:

Zuguang,

From what I can see, you have not updated the version number of your
package, so I suspect you'll find that none of your changes have

propogated

at all, though I can't entirely swear to that.

I believe Bioc packages only update in the repo (which I assume is also
when the splash-pages are updated) upon version bump.

~G

On Tue, Nov 17, 2015 at 4:35 AM, ??? <jokergoo at gmail.com> wrote:

Hi,

I am developing a package called ComplexHeatmap and re-format the
vignettes
recently. I deleted the old vignettes and created several new

vignettes.

But when I look at the web page of the package (
http://bioconductor.org/packages/devel/bioc/html/ComplexHeatmap.html

),

the
old vignette files (the bottom three vignettes) are still there but

they

are already removed in svn
(

https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ComplexHeatmap/vignettes/

)

I guess it may because some rules of svn but I am not experienced for
this
and I commit changes through github mirror. I want to remove the

bottom

three vignettes which start without numbers ("Making Complex Heatmap",
and
the two "Quick Examples of Making Complex Heatmaps"). Can anyone give
some
clue how to do this?

Thanks!
Zuguang

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--
Gabriel Becker, Ph.D
Associate Scientist
Bioinformatics and Computational Biology
Genentech Research

--
Gabriel Becker, Ph.D
Associate Scientist
Bioinformatics and Computational Biology
Genentech Research

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