[Bioc-devel] Cytoscape installed on bioc builders?
Hi Catherine, As far as I know, it is impossible. See the comments from Martin Morgan and Paul Shannon below https://github.com/Bioconductor/Contributions/issues/1513#issuecomment-644113558 I am maintaining a package for Cytoscape workflow (called transomics2cytoscape). I test it only on the local Desktop environment, not on the bioc builders. RCy3 is also tested only on the local Desktop environment, not on the bioc builders. I think that your fedup package can only be tested locally . (about the functions using Cytoscape.) Kozo -- Kozo Nishida knishida at riken.jp Laboratory for Biologically Inspired Computing 6-2-3, Furuedai, Suita, Osaka 565-0874, JAPAN RIKEN Center for Biosystems Dynamics Research On Sat, Mar 6, 2021 at 8:36 AM Catherine Ross
<catherinem.ross at mail.utoronto.ca> wrote:
Hi bioc-devel, My package contains a function that requires Cytoscape. For this function to run, I need to have Cytoscape installed and open on my computer. https://github.com/rosscm/fedup/blob/main/R/femap.R This poses an issue when attempting to test the function since I can?t control Cytoscape on the bioc builders, so I can?t test the function at all. Is it possible to have Cytoscape installed on the builders to be able to run such tests? Catherine [[alternative HTML version deleted]]
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