Message-ID: <ccfcece2-d827-e47d-752b-eda92cf6c39a@igtp.cat>
Date: 2019-05-17T11:38:37Z
From: Bernat Gel
Subject: [Bioc-devel] InteractionSet for structural variants
Hi all,
Is there any standard recommended container for genomic structural
variants? I think InteractionSet would work fine for translocation and
GRanges for inversions and copy number changes, but I don't know what
would be the recommended way to store them all together using standard
Bioconductor objects.
And actually, is there any package that would load a SV VCF by lumpy or
delly and build that object?
Thanks!
Bernat