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Bioc-devel May 2019

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Wednesday, May 29, 2019 4 emails
Jiping Wang NuPoP updated Shepherd, Lori NuPoP updated Jiping Wang NuPoP updated Shepherd, Lori NuPoP updated
Tuesday, May 28, 2019 21 emails
Jiping Wang NuPoP updated Laurent Gatto index of Bioc repository unavailable Hervé Pagès index of Bioc repository unavailable Laurent Gatto index of Bioc repository unavailable Turaga, Nitesh BioC packages NuPoP and nuCpos Jiping Wang BioC packages NuPoP and nuCpos Jiping Wang BioC packages NuPoP and nuCpos Turaga, Nitesh BioC packages NuPoP and nuCpos Jiping Wang BioC packages NuPoP and nuCpos Turaga, Nitesh BioC packages NuPoP and nuCpos Hervé Pagès IRanges should support long vectors Jiping Wang BioC packages NuPoP and nuCpos Martin Maechler use -Wa, -mbig-obj -O3 when building package under Windows Pariksheet Nanda IRanges should support long vectors Turaga, Nitesh BioC packages NuPoP and nuCpos Jiping Wang BioC packages NuPoP and nuCpos Turaga, Nitesh BioC packages NuPoP and nuCpos Jiping Wang BioC packages NuPoP and nuCpos Turaga, Nitesh Updating email for BiocCredentials Turaga, Nitesh Add maintainer of synergyfinder Hervé Pagès IRanges should support long vectors
Saturday, May 25, 2019 2 emails
Pariksheet Nanda IRanges should support long vectors Jiping Wang BioC packages NuPoP and nuCpos
Friday, May 24, 2019 9 emails
Daniel Lai Updating email for BiocCredentials Ramon Diaz-Uriarte use -Wa, -mbig-obj -O3 when building package under Windows Jiping Wang BioC packages NuPoP and nuCpos Hervé Pagès loading database package changes random number Kasper Daniel Hansen use -Wa, -mbig-obj -O3 when building package under Windows Ramon Diaz-Uriarte use -Wa, -mbig-obj -O3 when building package under Windows Shepherd, Lori BioC packages NuPoP and nuCpos Jiping Wang BioC packages NuPoP and nuCpos Shepherd, Lori A question about version number
Thursday, May 23, 2019 3 emails
Kasper Daniel Hansen loading database package changes random number Arman Shahrisa A question about version number Steffi Grote loading database package changes random number
Wednesday, May 22, 2019 6 emails
Martin Morgan daily build failures for the trena package, related to BSgenome.Hsapiens.UCSC.hg38 2bit file Paul Shannon daily build failures for the trena package, related to BSgenome.Hsapiens.UCSC.hg38 2bit file Leonardo Collado Torres Procedure for changing email Martin Morgan loading database package changes random number Kasper Daniel Hansen loading database package changes random number Steffi Grote loading database package changes random number
Tuesday, May 21, 2019 9 emails
Kasper Daniel Hansen InteractionSet for structural variants Daniel Cameron InteractionSet for structural variants Kasper Daniel Hansen InteractionSet for structural variants Shepherd, Lori Single Package Builder Updates Michael Lawrence InteractionSet for structural variants Daniel Cameron InteractionSet for structural variants Patrick Casimir Documentation on Extending BioC Packages Shepherd, Lori Single Package Builder Updates Sean Davis InteractionSet for structural variants
Monday, May 20, 2019 7 emails
Aaron Lun InteractionSet for structural variants Neumann, Steffen Documentation on Extending BioC Packages Turaga, Nitesh Procedure for changing email Leonardo Collado Torres Procedure for changing email Tang, Jing Change the maintainer of synergyfinder Levi Waldron Bioc2019 NYC registration nearly full Bernat Gel InteractionSet for structural variants
Sunday, May 19, 2019 1 email
Patrick Casimir Documentation on Extending BioC Packages
Friday, May 17, 2019 2 emails
Aaron Lun InteractionSet for structural variants Bernat Gel InteractionSet for structural variants
Thursday, May 16, 2019 3 emails
Turaga, Nitesh FCBF git push to RELEASE_3_9 was denied Martin Morgan Bioconductor Technical Advisory Board Kasper Daniel Hansen SummarizedExperiments not equal after serialisation
Wednesday, May 15, 2019 2 emails
Hervé Pagès SummarizedExperiments not equal after serialisation Tiago Lubiana Alves FCBF git push to RELEASE_3_9 was denied
Monday, May 13, 2019 2 emails
Shepherd, Lori List of Deprecated Package Bioc 3.10 Turaga, Nitesh duplicate commits in preprocessCore
Sunday, May 12, 2019 3 emails
Turaga, Nitesh Pre-receive hook on git.bioconductor.org to prevent merge conflict markers enabled Ben Bolstad duplicate commits in preprocessCore Argi Sake Account activation
Saturday, May 11, 2019 5 emails
Aaron Lun SummarizedExperiments not equal after serialisation Hervé Pagès Pre-receive hook on git.bioconductor.org to prevent merge conflict markers enabled Hervé Pagès Pre-receive hook on git.bioconductor.org to prevent merge conflict markers enabled Martin Morgan SummarizedExperiments not equal after serialisation Laurent Gatto SummarizedExperiments not equal after serialisation
Friday, May 10, 2019 2 emails
Paul Shannon build errors: "Error in .seqlengths_TwoBitFile(x) : UCSC library operation failed" Turaga, Nitesh Pre-receive hook on git.bioconductor.org to prevent merge conflict markers enabled
Thursday, May 9, 2019 4 emails
Vincent Carey warnings with BiocStyle pdf compilation Andrzej Oleś warnings with BiocStyle pdf compilation Pages Gallego, M. Roxygen web working Roxygen
Wednesday, May 8, 2019 3 emails
Martin Morgan Bioc-devel Digest, Vol 182, Issue 7 McDavid, Andrew Bioc-devel Digest, Vol 182, Issue 7 Shepherd, Lori Bioconductor Git Credentials
Tuesday, May 7, 2019 12 emails
Shepherd, Lori Annotation/Experiment Hub issue Miles Benton BiocManager for BioC 3.9/R 3.6 Hervé Pagès builds of last 2 days Karim Mezhoud builds of last 2 days Shepherd, Lori Annotation/Experiment Hub issue ruizhu huang permission denied Martin Morgan permission denied Martin Morgan BiocManager for BioC 3.9/R 3.6 Miles Benton BiocManager for BioC 3.9/R 3.6 Felix Ernst BiocManager for BioC 3.9/R 3.6 Günter Klambauer Rchemcpp problems reported in the Multiple platform build/check report for BioC 3.9 ruizhu huang permission denied
Monday, May 6, 2019 11 emails
Josef Spidlen Bioconductor Git Credentials Boris Steipe showAsCell, character feature request [Re: Possible bug in showAsCell, character] Laurent Gatto showAsCell, character feature request [Re: Possible bug in showAsCell, character] Turaga, Nitesh pushing changes to an existing package Turaga, Nitesh FCBF git push to RELEASE_3_9 was denied Simina Boca pushing changes to an existing package Shepherd, Lori Single Package Builder for New Submissions Vincent Carey warnings with BiocStyle pdf compilation Tiago Lubiana Alves FCBF git push to RELEASE_3_9 was denied Shepherd, Lori Single Package Builder for New Submissions Shepherd, Lori permission denied
Saturday, May 4, 2019 1 email
Laurent Gatto Possible bug in showAsCell,character
Friday, May 3, 2019 4 emails
Shepherd, Lori Bioconductor 3.9 is released!! simo@e@tiberi m@iii@g oii uzh@ch Antwort: Re: Vignette format Shepherd, Lori Vignette format Thomas Lawson Mc OSX fail [MSData::Spectrum::getMZIntensityPairs()] Sizes do not match
Thursday, May 2, 2019 21 emails
Shin, Sunyoung Error: invalid graphics state in creating vignettes Jianhai Zhang Vignette format Turaga, Nitesh pushing changes to an existing package Simina Boca pushing changes to an existing package Turaga, Nitesh pushing changes to an existing package Turaga, Nitesh pushing changes to an existing package Turaga, Nitesh Access to Bioc git server resumed Simina Boca pushing changes to an existing package Turaga, Nitesh pushing changes to an existing package Simina Boca pushing changes to an existing package Pages Gallego, M. When to use generics? ruizhu huang permission denied Clark, Lindsay V readVcf problems in package check Turaga, Nitesh Bioconductor version 3.9 branching today Turaga, Nitesh Bioconductor version 3.9 branching today Turaga, Nitesh Deleting a branch on Bioconductor git Shepherd, Lori 'MoonlightR' Bioconductor package ERROR Ko-Kang Kevin Wang Deleting a branch on Bioconductor git Shepherd, Lori 'MoonlightR' Bioconductor package ERROR Shepherd, Lori permission denied ruizhu huang permission denied
Wednesday, May 1, 2019 10 emails
Hervé Pagès readVcf problems in package check Antonio Colaprico 'MoonlightR' Bioconductor package ERROR Clark, Lindsay V readVcf problems in package check Hervé Pagès When to use generics? Michael Lawrence When to use generics? Boris Steipe When to use generics? Michael Lawrence When to use generics? Kasper Daniel Hansen When to use generics? Shepherd, Lori Last Day to Commit changes before release Shepherd, Lori check error in SeqVarTools