[Bioc-devel] report a minor bug in GenomicRanges
Yes, I am calling reduce on a GRanges object. I just hate any warning or error message. That's all. Yours Sincerely, Jianhong Ou LRB 670A Program in Gene Function and Expression 364 Plantation Street Worcester, MA 01605
On 3/21/14 1:26 PM, "Herv? Pag?s" <hpages at fhcrc.org> wrote:
Hi Jianhong, On 03/21/2014 07:01 AM, Ou, Jianhong wrote:
Hi, When I run sample code for reduce, I got Warning message: The 'with.mapping' argument is deprecated. Please use the 'with.revmap' argument instead.
Not really a bug, just a warning that the 'with.mapping' arg is being replaced by the 'with.revmap' arg, except that 'with.revmap' is not available yet when reducing a GRanges object... sorry :-/ Will be in the next couple of days. Note that it's already available when reducing an IRanges object, but I suspect in your case you're calling reduce() on a GRanges object right? Thanks, H.
Yours Sincerely, Jianhong Ou LRB 670A Program in Gene Function and Expression 364 Plantation Street Worcester, MA 01605 [[alternative HTML version deleted]]
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-- Herv? Pag?s Program in Computational Biology Division of Public Health Sciences Fred Hutchinson Cancer Research Center 1100 Fairview Ave. N, M1-B514 P.O. Box 19024 Seattle, WA 98109-1024 E-mail: hpages at fhcrc.org Phone: (206) 667-5791 Fax: (206) 667-1319