Message-ID: <59b598bd-1d6b-ee35-531f-2fd44ca6ddec@roswellpark.org>
Date: 2018-05-11T13:54:32Z
From: Martin Morgan
Subject: [Bioc-devel] Unexpected Warning About Cross-Reference Without Package Specification
In-Reply-To: <SYAPR01MB2558B0D20DE5296DACBE1DD1CD9F0@SYAPR01MB2558.ausprd01.prod.outlook.com>
I'm not really sure about this, but Writing R Extensions says about
these forms of \link that they are seldom needed, except when linking to
"not-yet-installed packages". I think if you were to have installed
limma without first building it (e.g., R CMD INSTALL limma rather than R
CMD INSTALL limma_3.37.1.zip or biocLite("limma")) then the help pages
might not have been indexed, so R doesn't know how to find lmFit.
It's really hard to know without more context.
Martin
On 05/11/2018 09:00 AM, Dario Strbenac wrote:
> Good day,
>
> Indeed, it is in the Suggests component of the dependency specification. I didn't find any extra requirements for this case in the Cross-references section of Writing R Extensions, so I'm unsure of where to read about the rule.
>
> --------------------------------------
> Dario Strbenac
> University of Sydney
> Camperdown NSW 2050
> Australia
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