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Bioc-devel May 2018

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Thursday, May 31, 2018 4 emails
Lulu Chen onLoad failed for rJava in nigthly 'devel' build Obenchain, Valerie Windows, normalizePath(), and non-ASCII characters Shepherd, Lori build cache on bioconductor build system? Vivek Bhardwaj build cache on bioconductor build system?
Wednesday, May 30, 2018 7 emails
Hervé Pagès build cache on bioconductor build system? Shepherd, Lori build report repeating the same error Sara Linker build report repeating the same error Vivek Bhardwaj build cache on bioconductor build system? Martin Morgan build cache on bioconductor build system? Vivek Bhardwaj build cache on bioconductor build system? Shepherd, Lori Time out in R CMD check
Sunday, May 27, 2018 1 email
Xu Ren Time out in R CMD check
Friday, May 25, 2018 1 email
Hervé Pagès How best to remap S4Vectors::Hits indices?
Thursday, May 24, 2018 3 emails
Neumann, Steffen BiocInstaller: next generation Pariksheet Nanda How best to remap S4Vectors::Hits indices? Martin Morgan Examples of reading files of not allowed type
Wednesday, May 23, 2018 2 emails
Jordan Bisanz Examples of reading files of not allowed type Shepherd, Lori List of Deprecated Packages for Bioc3.8
Tuesday, May 22, 2018 4 emails
Pariksheet Nanda How best to remap S4Vectors::Hits indices? Mike Smith Windows, normalizePath(), and non-ASCII characters Martin Morgan Update existing packages and change name Sokratis Kariotis Update existing packages and change name
Monday, May 21, 2018 12 emails
Peter Hickey any interest in a BiocMatrix core package? Hervé Pagès Build error in tokay2: cannot reserve space for vector Hervé Pagès modify _R_CHECK_FORCE_SUGGESTS_ ? Turaga, Nitesh MoonlightR maintainer Catharina Olsen MoonlightR maintainer Shepherd, Lori Access rights to data packages Nuno Agostinho Access rights to data packages Obenchain, Valerie merge two maintainer accounts Martin Morgan Build error in tokay2: cannot reserve space for vector Shepherd, Lori Access rights to data packages Nuno Agostinho Access rights to data packages Paolo Martini Batch Package Submission
Saturday, May 19, 2018 4 emails
Rhonda Bacher merge two maintainer accounts Michael Lawrence modify _R_CHECK_FORCE_SUGGESTS_ ? Vivek Bhardwaj modify _R_CHECK_FORCE_SUGGESTS_ ? Vivek Bhardwaj modify _R_CHECK_FORCE_SUGGESTS_ ?
Friday, May 18, 2018 12 emails
Michael Lawrence modify _R_CHECK_FORCE_SUGGESTS_ ? Martin Morgan modify _R_CHECK_FORCE_SUGGESTS_ ? Gabriel Becker modify _R_CHECK_FORCE_SUGGESTS_ ? Michael Lawrence modify _R_CHECK_FORCE_SUGGESTS_ ? Gabriel Becker modify _R_CHECK_FORCE_SUGGESTS_ ? Vivek Bhardwaj modify _R_CHECK_FORCE_SUGGESTS_ ? Shepherd, Lori typo on website 'install' page Tim Triche, Jr. typo on website 'install' page Martin Morgan BiocInstaller: next generation James W. MacDonald BiocInstaller: next generation Sergio Picart Armada Build error in tokay2: cannot reserve space for vector Neumann, Steffen BiocInstaller: next generation
Thursday, May 17, 2018 9 emails
Hervé Pagès Batch Package Submission Obenchain, Valerie About MLSeq Package Paolo Martini Batch Package Submission Shepherd, Lori reopen issue (submission) on github Kort, Eric reopen issue (submission) on github Shepherd, Lori reopen issue (submission) on github Kort, Eric reopen issue (submission) on github Nicolas Delhomme Build time-out on malbec1 Shepherd, Lori Build time-out on malbec1
Wednesday, May 16, 2018 4 emails
Gökmen Zararsız About MLSeq Package Nicolas Descostes BiocInstaller: next generation Martin Morgan BiocInstaller: next generation Nicolas Descostes BiocInstaller: next generation
Tuesday, May 15, 2018 14 emails
Obenchain, Valerie rsvg on mac Jialin Ma [Bioc-devel] [Fwd: Problem showing a GRanges with a meta data column of data frame] Ben Bolstad Package download when using functions from affy and oligo cstrato EXTERNAL: Re: Cannot update my development package to Bioconductor Hervé Pagès [Bioc-devel] [Fwd: Problem showing a GRanges with a meta data column of data frame] Turaga, Nitesh EXTERNAL: Re: Cannot update my development package to Bioconductor cstrato EXTERNAL: Re: Cannot update my development package to Bioconductor Shepherd, Lori htSeqTools and giniCoverage error Shepherd, Lori htSeqTools and giniCoverage error Nicolas Descostes htSeqTools and giniCoverage error Turaga, Nitesh EXTERNAL: Re: Cannot update my development package to Bioconductor Shepherd, Lori htSeqTools and giniCoverage error Kasper Daniel Hansen Package size note Kenneth Condon Package size note
Monday, May 14, 2018 20 emails
Jialin Ma [Bioc-devel] [Fwd: Problem showing a GRanges with a meta data column of data frame] Jialin Ma Problem showing a GRanges with a meta data column of data frame Martin Morgan Package download when using functions from affy and oligo Jack Fu GenomicRanges List subclass and apply Marcel Ramos EXTERNAL: Re: Cannot update my development package to Bioconductor cstrato Cannot update my development package to Bioconductor Hervé Pagès BSGenome submission. Turaga, Nitesh Cannot update my development package to Bioconductor cstrato Cannot update my development package to Bioconductor Jose V. Die BSGenome submission. Hervé Pagès GenomicRanges List subclass and apply Martin Morgan BiocInstaller: next generation Michael Lawrence GenomicRanges List subclass and apply Jack Fu GenomicRanges List subclass and apply Michael Lawrence GenomicRanges List subclass and apply Jack Fu GenomicRanges List subclass and apply Joris Meys Package download when using functions from affy and oligo Kevin Horan rsvg on mac Shepherd, Lori Package size note Nicolas Delhomme Build time-out on malbec1
Sunday, May 13, 2018 2 emails
Hervé Pagès BSGenome submission. Nicolas Descostes htSeqTools and giniCoverage error
Saturday, May 12, 2018 4 emails
Dario Strbenac Unexpected Warning About Cross-Reference Without Package Specification Kenneth Condon Package size note Kenneth Condon Vignette warnings/errors Martin Morgan Unexpected Warning About Cross-Reference Without Package Specification
Friday, May 11, 2018 19 emails
Dario Strbenac Unexpected Warning About Cross-Reference Without Package Specification Martin Morgan Unexpected Warning About Cross-Reference Without Package Specification Dario Strbenac Unexpected Warning About Cross-Reference Without Package Specification Jose V. Die BSGenome submission. Vincent Carey Vignette warnings/errors Martin Morgan Vignette warnings/errors Kenneth Condon Vignette warnings/errors Kenneth Condon Vignette warnings/errors Kenneth Condon CRAN R 3.5 binary - where is it? Martin Morgan Unexpected Warning About Cross-Reference Without Package Specification Nicolas Descostes biocValid() and package version Dario Strbenac Unexpected Warning About Cross-Reference Without Package Specification Shepherd, Lori biocValid() and package version Martin Morgan Unexpected Warning About Cross-Reference Without Package Specification Martin Morgan BiocInstaller: next generation Dario Strbenac BiocInstaller: next generation Robert Castelo limma Suggests:statmod vs Imports:statmod Lluís Revilla BiocInstaller: next generation Ryan limma Suggests:statmod vs Imports:statmod
Thursday, May 10, 2018 13 emails
Robert Castelo limma Suggests:statmod vs Imports:statmod Mike Smith BioC 2018 poster / talk / scholarship / workshop application deadline May 17 Dario Strbenac Unexpected Warning About Cross-Reference Without Package Specification Pijush Das BioC 2018 poster / talk / scholarship / workshop application deadline May 17 Joris Meys CRAN R 3.5 binary - where is it? Nicolas Descostes biocValid() and package version Hervé Pagès CRAN R 3.5 binary - where is it? Kenneth Condon CRAN R 3.5 binary - where is it? Hervé Pagès CRAN R 3.5 binary - where is it? Clarice Groeneveld CRAN R 3.5 binary - where is it? Kenneth Condon CRAN R 3.5 binary - where is it? Michael Lawrence class name collision in cache: igvR and Gviz Martin Morgan BiocInstaller: next generation
Wednesday, May 9, 2018 12 emails
Pariksheet Nanda BiocInstaller: next generation Henrik Bengtsson BiocInstaller: next generation Martin Morgan BiocInstaller: next generation Martin Morgan BiocInstaller: next generation Aaron Lun BiocInstaller: next generation Ryan BiocInstaller: next generation Martin Morgan BiocInstaller: next generation Obenchain, Valerie rsvg on mac Shepherd, Lori Initial list of deprecated packages Bioc 3.8 Paul Shannon class name collision in cache: igvR and Gviz Kevin Horan rsvg on mac Martin Morgan BioC 2018 poster / talk / scholarship / workshop application deadline May 17
Tuesday, May 8, 2018 7 emails
Pijush Das BioC 2018 poster / talk / scholarship / workshop application deadline May 17 Monther Alhamdoosh Using https to maintain a package Michael Lawrence class name collision in cache: igvR and Gviz Anand MT proc.time error Martin Morgan proc.time error Turaga, Nitesh Using https to maintain a package Sean Davis Using https to maintain a package
Monday, May 7, 2018 9 emails
Anand MT proc.time error Monther Alhamdoosh Using https to maintain a package Paul Shannon class name collision in cache: igvR and Gviz Shepherd, Lori Switch to SSH protocol for git clone instructions on package landing pages? Shepherd, Lori Updates to Single Package Builder for New Submissions Lluís Revilla Transition from Google Sheet to Web App Shepherd, Lori Updates to Single Package Builder for New Submissions Obenchain, Valerie Transition from Google Sheet to Web App Kasper Daniel Hansen Switch to SSH protocol for git clone instructions on package landing pages?
Sunday, May 6, 2018 2 emails
Martin Morgan Switch to SSH protocol for git clone instructions on package landing pages? Martin Morgan BioC 2018 poster / talk / scholarship / workshop application deadline May 17
Saturday, May 5, 2018 2 emails
Vincent Carey Package download when using functions from affy and oligo Joris Meys Package download when using functions from affy and oligo
Friday, May 4, 2018 8 emails
James W. MacDonald Package download when using functions from affy and oligo James W. MacDonald Package download when using functions from affy and oligo Michael Lawrence class name collision in cache: igvR and Gviz Obenchain, Valerie Package download when using functions from affy and oligo Hervé Pagès class name collision in cache: igvR and Gviz Paul Shannon class name collision in cache: igvR and Gviz Sean Davis DOI information Felix Ernst DOI information
Thursday, May 3, 2018 15 emails
Obenchain, Valerie errors on Windows 3.7 builds Joris Meys Strange error for windows build Obenchain, Valerie errors on Windows 3.7 builds Christopher John Strange error for windows build Bernd Klaus "Reviving" an existing workflow kushal kumar dey Common Windows build problems for `CountClust` and `Logolas` Maria Keays Email no longer active Obenchain, Valerie no Mac in devel build report today Ashish Jain "TissueEnrich" is failing on windows server in the BioC 3.7 build Shepherd, Lori "Reviving" an existing workflow Obenchain, Valerie Email no longer active Maria Keays Email no longer active Obenchain, Valerie Email no longer active Maria Keays Email no longer active Bernd Klaus "Reviving" an existing workflow
Wednesday, May 2, 2018 7 emails
Joris Meys Package download when using functions from affy and oligo Peter Hickey bsseqData Turaga, Nitesh bsseqData Peter Hickey bsseqData Turaga, Nitesh bsseqData Kasper Daniel Hansen Virtual class for `matrix` and `DelayedArray`? (or better strategy for dealing with them both) Elizabeth Purdom Virtual class for `matrix` and `DelayedArray`? (or better strategy for dealing with them both)
Tuesday, May 1, 2018 9 emails
Obenchain, Valerie Bioconductor 3.7 is released Justin Silverman The following bioconductor packages have duplicate commits Justin Silverman The following bioconductor packages have duplicate commits Turaga, Nitesh The following bioconductor packages have duplicate commits Turaga, Nitesh The following bioconductor packages have duplicate commits Nima Hejazi push access to adaptest Obenchain, Valerie Web App for SSH keys Obenchain, Valerie push access to adaptest Martin Morgan Need some help to submit a R package.
Monday, April 30, 2018 1 email
Pijush Das Need some help to submit a R package.