[Bioc-devel] R web interface

Have you looked at the Galaxy project (usegalaxy.org, and
getgalaxy.org)? A lot of the tools there use R, and there is a recent
initiative to be able to easily expose R functions as Galaxy tools
using the RGalaxy package in Bioconductor. From your description of
how analyses are described, it sounds very similar to what goes into
making a tool available in Galaxy.

Cheers,

-Robert


Robert M. Flight, Ph.D.
University of Louisville Bioinformatics Laboratory
University of Louisville
Louisville, KY

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discoveries, is not "Eureka!" (I found it!) but "That's funny ..." -
Isaac Asimov


On Wed, Aug 8, 2012 at 3:08 AM, Sjoerd Vosse <sjoerdvos at yahoo.com> wrote:

Ah thanks for the tip, I'll check it out!

Message: 2
Date: Tue, 7 Aug 2012 10:45:35 -0700
From: "Kieran O'Neill" <koneill at bccrc.ca>
To: "bioc-devel at r-project.org" <bioc-devel at r-project.org>
Subject: Re: [Bioc-devel] R web interface
Message-ID:
    <B2B905CD6A0E134E9C2347E3B7BF7C8C0303D06FF41B at crcmail4.BCCRC.CA>
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I
 know our lab uses GenePattern for this purpose. I think it fulfils all
of your requirements, and is quite mature (and free) software.

http://www.broadinstitute.org/cancer/software/genepattern/