Message-ID: <532C764B.8060608@fhcrc.org>
Date: 2014-03-21T17:26:35Z
From: Hervé Pagès
Subject: [Bioc-devel] report a minor bug in GenomicRanges
In-Reply-To: <CF51BE7C.FEE8%jianhong.ou@umassmed.edu>
Hi Jianhong,
On 03/21/2014 07:01 AM, Ou, Jianhong wrote:
> Hi,
>
> When I run sample code for reduce, I got Warning message:
> The 'with.mapping' argument is deprecated.
> Please use the 'with.revmap' argument instead.
Not really a bug, just a warning that the 'with.mapping' arg is being
replaced by the 'with.revmap' arg, except that 'with.revmap' is not
available yet when reducing a GRanges object... sorry :-/ Will be in
the next couple of days.
Note that it's already available when reducing an IRanges object,
but I suspect in your case you're calling reduce() on a GRanges object
right?
Thanks,
H.
>
> Yours Sincerely,
>
> Jianhong Ou
>
> LRB 670A
> Program in Gene Function and Expression
> 364 Plantation Street Worcester,
> MA 01605
>
> [[alternative HTML version deleted]]
>
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>
--
Herv? Pag?s
Program in Computational Biology
Division of Public Health Sciences
Fred Hutchinson Cancer Research Center
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