hi,
i'm using the CompressedVRangesList class in VariantFiltering to hold
variants and their annotations across multiple samples and found that there
was no show method for this class (unless i'm missing the right import
here) so i made one within VariantFiltering by copying&pasting from other
similar classes:
setMethod("show", signature(object="CompressedVRangesList"),
function(object) {
lo <- length(object)
cat(classNameForDisplay(object), " of length ", lo, "\n",
sep = "")
if (!is.null(names(object)))
cat(BiocGenerics:::labeledLine("names", names(object)))
})
i guess, however, that the right home for this would be VariantAnnotation.
let me know if you consider adding it there (or somewhere else) and i'll
remove it from VariantFiltering.
thanks,
robert.