Skip to content

Bioc-devel February 2015

|
Saturday, February 28, 2015 6 emails
Li, Dongmei A question on adding data in R package development Laurent Gatto proteomics/MS generic Martin Morgan 100k SVN commits... Laurent Gatto proteomics/MS generic Laurent Gatto A question on adding data in R package development Li, Dongmei A question on adding data in R package development
Friday, February 27, 2015 7 emails
Hervé Pagès 100k SVN commits... Hervé Pagès 100k SVN commits... Martin Morgan 100k SVN commits... Marc Carlson Feature Request--add host and port to makeTxDbPackageFromBiomart Dan Tenenbaum Bioconductor 3.1 release schedule now available Dan Tenenbaum Bioconductor 3.1 release schedule now available Sean Davis Feature Request--add host and port to makeTxDbPackageFromBiomart
Thursday, February 26, 2015 2 emails
Hervé Pagès Importing classes into NAMESPACE Robert Castelo show method for CompressedVRangesList-class
Wednesday, February 25, 2015 19 emails
Hervé Pagès BamTallyParam argument 'which' Hervé Pagès BamTallyParam argument 'which' Hervé Pagès BamTallyParam argument 'which' Michael Lawrence show method for CompressedVRangesList-class Michael Lawrence show method for CompressedVRangesList-class Michael Lawrence Importing classes into NAMESPACE Gabriel Becker Importing classes into NAMESPACE Karolis Uziela Importing classes into NAMESPACE Gabriel Becker show method for CompressedVRangesList-class Michael Lawrence show method for CompressedVRangesList-class Robert Castelo show method for CompressedVRangesList-class Michael Lawrence show method for CompressedVRangesList-class Robert Castelo show method for CompressedVRangesList-class Michael Lawrence BamTallyParam argument 'which' Gabriel Becker BamTallyParam argument 'which' Gabriel Becker Importing classes into NAMESPACE Thomas Sandmann Importing classes into NAMESPACE Michael Lawrence Importing classes into NAMESPACE Karolis Uziela Importing classes into NAMESPACE
Tuesday, February 24, 2015 5 emails
Leonardo Collado Torres BamTallyParam argument 'which' Michael Lawrence show method for CompressedVRangesList-class Robert Castelo show method for CompressedVRangesList-class Michael Lawrence show method for CompressedVRangesList-class Robert Castelo show method for CompressedVRangesList-class
Monday, February 23, 2015 11 emails
Valerie Obenchain GRanges to VRanges coercion Leonard Goldstein BamTallyParam argument 'which' Hervé Pagès BamTallyParam argument 'which' Michael Lawrence BamTallyParam argument 'which' Leonard Goldstein BamTallyParam argument 'which' Michael Lawrence BamTallyParam argument 'which' Thomas Sandmann BamTallyParam argument 'which' Michael Lawrence BamTallyParam argument 'which' Cook, Malcolm A quick check for matching seqnames/order needed for Views on RleList? Leonardo Collado Torres Confused by readGAlignments(scanBamParam( which )) Tom Hardcastle baySeq countData class bug?
Sunday, February 22, 2015 1 email
Thomas Sandmann BamTallyParam argument 'which'
Saturday, February 21, 2015 1 email
Sean Davis A quick check for matching seqnames/order needed for Views on RleList?
Friday, February 20, 2015 16 emails
Hervé Pagès A quick check for matching seqnames/order needed for Views on RleList? Michael Lawrence BamTallyParam argument 'which' Hervé Pagès GRanges to VRanges coercion Michael Lawrence GRanges to VRanges coercion Hervé Pagès Random access to sequences in fasta files Thomas Sandmann BamTallyParam argument 'which' Kasper Daniel Hansen A quick check for matching seqnames/order needed for Views on RleList? Li, Dongmei A quick questions on writing R functions Gabriel Becker A quick questions on writing R functions Li, Dongmei A quick questions on writing R functions Elena Grassi A quick questions on writing R functions Li, Dongmei A quick questions on writing R functions Sean Davis A quick check for matching seqnames/order needed for Views on RleList? Malcolm Perry A quick check for matching seqnames/order needed for Views on RleList? Sean Davis A quick check for matching seqnames/order needed for Views on RleList? Panagiotis Moulos baySeq countData class bug?
Thursday, February 19, 2015 5 emails
Hervé Pagès readGAlignmentsFromBam function Michael Lawrence readGAlignmentsFromBam function Thomas Sandmann GRanges to VRanges coercion James W. MacDonald GEOquery Warnings When Reading SOFT File Philip Lijnzaad Documentation of GenomicRanges::follow etc. very hard to find
Wednesday, February 18, 2015 13 emails
Dario Strbenac GEOquery Warnings When Reading SOFT File Michael Lawrence Documentation of GenomicRanges::follow etc. very hard to find Martin Morgan Documentation of GenomicRanges::follow etc. very hard to find Hervé Pagès Documentation of GenomicRanges::follow etc. very hard to find Kasper Daniel Hansen Documentation of GenomicRanges::follow etc. very hard to find Dan Tenenbaum Documentation of GenomicRanges::follow etc. very hard to find Michael Lawrence Documentation of GenomicRanges::follow etc. very hard to find Hervé Pagès Documentation of GenomicRanges::follow etc. very hard to find James W. MacDonald Documentation of GenomicRanges::follow etc. very hard to find Michael Lawrence Documentation of GenomicRanges::follow etc. very hard to find Philip Lijnzaad Documentation of GenomicRanges::follow etc. very hard to find Martin Morgan Documentation of GenomicRanges::follow etc. very hard to find Philip Lijnzaad Documentation of GenomicRanges::follow etc. very hard to find
Tuesday, February 17, 2015 1 email
Paola Rancoita Call for papers: CIBB 2015, Naples, September 10-12, 2015
Monday, February 16, 2015 3 emails
Valerie Obenchain cryptic error in VariantAnnotation::locateVariants() Robert Castelo cryptic error in VariantAnnotation::locateVariants() Hahne, Florian OrganismDb and associated TxDb
Friday, February 13, 2015 3 emails
Marc Carlson OrganismDb and associated TxDb Hervé Pagès Masked version of BSgenome.Hsapiens.NCBI.GRCh38? Vincent Carey OrganismDb and associated TxDb
Wednesday, February 11, 2015 4 emails
Valerie Obenchain VariantAnnotation::isDelins() ?? Martin Morgan function name clash between TFBSTools and graphics Elena Grassi function name clash between TFBSTools and graphics Robert Castelo VariantAnnotation::isDelins() ??
Tuesday, February 10, 2015 5 emails
Valerie Obenchain VariantAnnotation::isDelins() ?? Robert Castelo VariantAnnotation::isDelins() ?? Guangchuang Yu vignettes is missing after build Martin Morgan vignettes is missing after build Guangchuang Yu vignettes is missing after build
Sunday, February 8, 2015 5 emails
Ulrich Bodenhofer Masked version of BSgenome.Hsapiens.NCBI.GRCh38? Hervé Pagès Masked version of BSgenome.Hsapiens.NCBI.GRCh38? Hervé Pagès Masked version of BSgenome.Hsapiens.NCBI.GRCh38? Martin Morgan Install edgeR def87 at gmx.de Install edgeR
Friday, February 6, 2015 5 emails
Dan Tenenbaum Error in citation info for SPAN.UPC Dan Tenenbaum Error in citation info for SPAN.UPC Dan Tenenbaum Error in citation info for SPAN.UPC Ryan Error in citation info for SPAN.UPC Ulrich Bodenhofer Masked version of BSgenome.Hsapiens.NCBI.GRCh38?
Tuesday, February 3, 2015 3 emails
Robert Castelo subtle error with VariantAnnotation::locateVariants() Valerie Obenchain subtle error with VariantAnnotation::locateVariants() Robert Castelo subtle error with VariantAnnotation::locateVariants()
Monday, February 2, 2015 1 email
Wolfgang Huber : Workshop Statistical Learning of Biological Systems - Ascona, Switzerland, May 31 to June 5, 2015