I guess this is really an argument for having _all_ method man pages be
aliased with the symbol of the generic. I wonder if R should just be made
smarter and bring up a menu whenever help is requested on a generic,
listing all of the available methods, with the default method as the
default selection.
On Wed, Feb 18, 2015 at 8:38 AM, Philip Lijnzaad <p.lijnzaad at umcutrecht.nl
On 02/18/2015 05:13 PM, Martin Morgan wrote:
On 02/18/2015 08:05 AM, Philip Lijnzaad wrote:
Dear all,
looking up the documentation on functions like follow() and
precede() is
very hard, since they are only documented under the topic
"nearest-methods",
which currently (GenomicRanges package 1.18.4) can only be found
using the
?? operator (and having found the name of the topic, most newbies
are still
shows
ANY,SummarizedExperiment
GenomicRanges,GenomicRanges
GenomicRanges,missing
SummarizedExperiment,ANY
SummarizedExperiment,SummarizedExperiment
Ranges,RangesORmissing
suggesting, e.g.,
method?"follow,GenomicRanges,GenomicRanges"
Hi Martin, thanks for the feedback. To be honest, your solution involves
more typing, and is not newbie-friendly since the
newbie doesn't now anything about "methods". S/he simply types ?follow
gets back an answer (from the IRanges docu),
and subsequently thing "oh well, follow() doesn't know about strands, and
then gets stuck). My request is simply to add the plain \alias{}es, i.e.
just like we have for findOverlaps and the methods described in
inter-range-methods.Rd. Or what would be the argument against that?
Cheers,
Philip
--
Philip Lijnzaad, PhD
Molecular Cancer Research
University Medical Center (UMC), Utrecht
Stratenum room 2.211
IM: plijnzaad at jabber.org , philip.lijnzaad at gmail.com
P.O. Box 85060, 3508 AB Utrecht
(Universiteitsweg 100, 3584 CG Utrecht)
The Netherlands
tel: +31 (0)8875 68464
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