[Bioc-devel] biocValid() and package version
yes that was the pb. I have to remove.packages from the wrong libraries. Thank you so much. Nicolas 2018-05-11 7:56 GMT-04:00 Shepherd, Lori <Lori.Shepherd at roswellpark.org>:
Not sure if this could be the case - but do you have the package installed
in multiple locations / multiple .libPaths() perhaps it is picking up the
package version that is in a different location?
Lori Shepherd
Bioconductor Core Team
Roswell Park Cancer Institute
Department of Biostatistics & Bioinformatics
Elm & Carlton Streets
Buffalo, New York 14263
------------------------------
*From:* Bioc-devel <bioc-devel-bounces at r-project.org> on behalf of
Nicolas Descostes <nicolas.descostes at gmail.com>
*Sent:* Thursday, May 10, 2018 5:44:43 PM
*To:* bioc-devel at r-project.org
*Subject:* [Bioc-devel] biocValid() and package version
Hi,
I am using R-devel with R 3.5 as my package will be released with this
version.
I want to make sure that I am using the latest version of all packages:
library("BiocInstaller")
biocValid()
Installed Built ReposVer
airway "0.112.0" "3.4.3" "0.115.0"
annotate "1.56.1" "3.4.3" "1.59.0"
[..]
ShortRead "1.36.0" "3.4.3" "1.39.0"
library("ShortRead")
packageVersion("ShortRead")
[1] ?1.39.0? Do you know why biocValid() is not catching the right installed version? I found a similar post here ( https://stat.ethz.ch/pipermail/bioc-devel/2014-November/006602.html) but could not find the answer. Thanks, Nicolas [[alternative HTML version deleted]]
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