[Bioc-devel] Bioconductor archive?
It looks like the Date/Publication field is only present when there was a change on the branch post release. (ie. any package that has a version x.y.(z+n) instead of x.y.0. After a release is frozen and a new release occurs, Bioconductor does not allow any changes or fixes even to bugs. A release is frozen so there is no changes after the new release occurs. I would have to dig in the history but my guess is 3.7 might be when we either switched to git or started having archived versions so likely not available before this date. Lori Shepherd - Kern Bioconductor Core Team Roswell Park Comprehensive Cancer Center Department of Biostatistics & Bioinformatics Elm & Carlton Streets Buffalo, New York 14263
From: Bioc-devel <bioc-devel-bounces at r-project.org> on behalf of Llu?s Revilla <lluis.revilla at gmail.com>
Sent: Saturday, March 15, 2025 5:20 AM
To: bioc-devel <bioc-devel at r-project.org>
Subject: [Bioc-devel] Bioconductor archive?
Sent: Saturday, March 15, 2025 5:20 AM
To: bioc-devel <bioc-devel at r-project.org>
Subject: [Bioc-devel] Bioconductor archive?
Hi, Recently I learned thanks to Martin Morgan that there are some files with the Date/Publication fields for Bioconductor packages: https://secure-web.cisco.com/1WmVHwH9-fASq-_cRqjzutLif_scf2tV0oia7j9wcAlmEkD6LTfPr4hpDabt4CAjYBdFcUrtqQXG2zbH0HakIsmTnqgnHUbghB0qC_b3FyGAhL5dnDBbz1Oh7HlpVwyPV79vgW7FMsg__zeInCyPb_jmFBXAvFRuq-HsBLTAC-Bf2EfgTjG3y38kBOIGnb59DWA6ILkuC-oYK0RJe8h3JvV5RoaeA9FxDk6QokHUT-YeC7hIEd_hURH1dV0dKbJN717qRcgwyT42SNb1evj91AQrxGnEyIR2XFpm28A-qOih3N2V_YsWsZd0wzGApXcZy/https%3A%2F%2Fbioconductor.org%2Fpackages%2F3.7%2Fbioc%2FVIEWS I'm trying to reconstruct which packages from CRAN and Biocondctor were available at any moment and it was very helpful. However, these files have the latest version published by a package on a given Bioconductor release. Is there a way to know if there were more updates after a release? I thought about searching the git log for each package. But that wouldn't be enough, as they might have increased their version but not passed Bioconductor checks, and thus not be released. Related to this, this field is present from Bioconductor version 3.7 or later but I couldn't find it on previous releases. Is there a way to know previous packages' releases and their dates? Packages' updates on the release branch should on contain bug fixes, but for reproducibility purposes it might be necessary to get the same bugs again. Many thanks in advance, Llu?s [[alternative HTML version deleted]] _______________________________________________ Bioc-devel at r-project.org mailing list https://secure-web.cisco.com/13SnGNaaDyFbctEb1TdAguAxRDGWtUJvQINgKyoWwg8r1Kce77xQNycHZxQSYbLF7m6L2z5y7dVIwm3y-9U1nxiyuzrQxuIQZc5HoTMPvbokKA1qJHn3CCb-Zlx3gtXWIW2VtFh_7loh_SYeLpi5ak38PFBFkLutgGFEwFhXbr0EFIo2W8HRtaqFNH9_U-hcBauAVzEJOJV9rFuxZom3twTGLLjMzaXn7ZhRdcG56Z_sAM0lzgdFeTgepY4mN7XAUwqNMoSSwjIeL10YspawZ6fy_yXLfIysgSN1DpVVdzc9Pv7GHlPjj7-EVYr-ScNbg/https%3A%2F%2Fstat.ethz.ch%2Fmailman%2Flistinfo%2Fbioc-devel This email message may contain legally privileged and/or confidential information. If you are not the intended recipient(s), or the employee or agent responsible for the delivery of this message to the intended recipient(s), you are hereby notified that any disclosure, copying, distribution, or use of this email message is prohibited. If you have received this message in error, please notify the sender immediately by e-mail and delete this email message from your computer. Thank you.