Message-ID: <MWHPR05MB35826D252E1B566962B373B6F98D0@MWHPR05MB3582.namprd05.prod.outlook.com>
Date: 2019-01-03T13:00:58Z
From: Martin Morgan
Subject: [Bioc-devel] Travis CI errors for BiocManager
In-Reply-To: <AM6PR03MB3814349E2A3D05FDD38892299F8D0@AM6PR03MB3814.eurprd03.prod.outlook.com>
This seems to be a regression in R-devel, and has been reported.
Previously (at least svn r75833, I think)
df <- data.frame(vers= package_version("1.2"))
rbind(df, df)$vers
returned
[1] '1.2' '1.2'
now (r75945) we have
> rbind(df, df)$vers
[[1]]
[1] 1 2
[[2]]
[1] 1 2
Martin
?On 1/3/19, 5:25 AM, "Bioc-devel on behalf of Erik Fasterius" <bioc-devel-bounces at r-project.org on behalf of erik.fasterius at outlook.com> wrote:
Hi,
I?m currently updating my package `seqCAT` with some new code, and I always run it through Travis CI before pushing changes to Bioconductor. The last build errors with the following message:
Updating HTML index of packages in '.Library'
Making 'packages.html' ... done
Error: invalid version specification ?c(3, 9)?
Execution halted
The command "eval Rscript -e 'if (!requireNamespace("BiocManager", quietly=TRUE)) install.packages("BiocManager");if (TRUE) BiocManager::install(version = "devel");cat(append = TRUE, file = "~/.Rprofile.site<http://Rprofile.site>", "options(repos = BiocManager::repositories());")' " failed.
This happens even though both `devtools::check()` and `BiocCheck()` completes without errors, like normal. I have never had this error before, and it started with the most recent change I did: `n()` to `dplyr::n()` in a single line of code (to account for the upcoming changes to the `dplyr` package), so I don?t believe the code itself is to blame.
Does anybody know what the problem is here?
Thanks in advance!
Erik
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