[Bioc-devel] EXTERNAL: Re: Cannot update my development package to Bioconductor
Dear Nitesh,
Thank you for pointing me to the website how to resolve the conflict.
I hope that now everything is ok.
For the records, here is what I did:
$ cd /Volumes/T3Data/CRAN/GIT/xps
$ git status
On branch master
Your branch is up-to-date with 'origin/master'.
Untracked files:
(use "git add <file>..." to include in what will be committed)
.DS_Store
xps/
nothing added to commit but untracked files present (use "git add" to track)
$ git add DESCRIPTION
$ git commit -m "Fixed conflicts in version change"
[master 0d3ccd0] Fixed conflicts in version change
1 file changed, 4 deletions(-)
$ git push origin master
Enter passphrase for key '/Users/cstrato/.ssh/id_rsa':
Counting objects: 3, done.
Delta compression using up to 8 threads.
Compressing objects: 100% (3/3), done.
Writing objects: 100% (3/3), 324 bytes | 0 bytes/s, done.
Total 3 (delta 2), reused 0 (delta 0)
remote: Resolving deltas: 100% (2/2), completed with 2 local objects.
To github.com:cstrato/xps.git
4121457..0d3ccd0 master -> master
$ git push upstream master
Enter passphrase for key '/Users/cstrato/.ssh/id_rsa':
Counting objects: 3, done.
Delta compression using up to 8 threads.
Compressing objects: 100% (3/3), done.
Writing objects: 100% (3/3), 324 bytes | 0 bytes/s, done.
Total 3 (delta 2), reused 0 (delta 0)
To git.bioconductor.org:packages/xps
4121457..0d3ccd0 master -> master
# check in Firefox
https://github.com/cstrato/xps
Best regards,
Christian
On 05/15/18 14:50, Turaga, Nitesh wrote:
Hi You have to fix the merge conflicts. Again, please take a look at the documentation on the website The canonical documentation for git: http://bioconductor.org/developers/how-to/git/ The documentation relevant to your problem: http://bioconductor.org/developers/how-to/git/resolve-conflicts/ Best, Nitesh
On May 15, 2018, at 8:43 AM, cstrato <cstrato at aon.at> wrote: Dear Marcel, Thank you for the clarification, now it seems to work. However, there is a strange problem. Here is what I did: $ cd /Volumes/T3Data/CRAN/GIT/xps $ git remote -v origin git at github.com:cstrato/xps.git (fetch) origin git at github.com:cstrato/xps.git (push) upstream git at git.bioconductor.org:packages/xps (fetch) upstream git at git.bioconductor.org:packages/xps (push) $ git checkout master Already on 'master' Your branch is up-to-date with 'origin/master'. $ git pull upstream master Enter passphrase for key '/Users/cstrato/.ssh/id_rsa': remote: Counting objects: 6, done. remote: Compressing objects: 100% (6/6), done. remote: Total 6 (delta 4), reused 0 (delta 0) Unpacking objects: 100% (6/6), done. From git.bioconductor.org:packages/xps * branch master -> FETCH_HEAD * [new branch] master -> upstream/master Auto-merging DESCRIPTION CONFLICT (content): Merge conflict in DESCRIPTION Automatic merge failed; fix conflicts and then commit the result. $ git add -v DESCRIPTION add 'DESCRIPTION' $ git add -v NEWS $ git commit -m "update for NEWS" [master 4121457] update for NEWS $ git push origin master Enter passphrase for key '/Users/cstrato/.ssh/id_rsa': Counting objects: 9, done. Delta compression using up to 8 threads. Compressing objects: 100% (9/9), done. Writing objects: 100% (9/9), 1.01 KiB | 0 bytes/s, done. Total 9 (delta 6), reused 0 (delta 0) remote: Resolving deltas: 100% (6/6), completed with 3 local objects. To github.com:cstrato/xps.git cf326be..4121457 master -> master $ git pull upstream master Enter passphrase for key '/Users/cstrato/.ssh/id_rsa': From git.bioconductor.org:packages/xps * branch master -> FETCH_HEAD Already up-to-date. $ git push upstream master Enter passphrase for key '/Users/cstrato/.ssh/id_rsa': Counting objects: 11, done. Delta compression using up to 8 threads. Compressing objects: 100% (11/11), done. Writing objects: 100% (11/11), 1.68 KiB | 0 bytes/s, done. Total 11 (delta 8), reused 0 (delta 0) To git.bioconductor.org:packages/xps aae14d1..4121457 master -> master It seems that there was a conflict with DESCRIPTION, so I did again 'git add DESCRIPTION' Now everything seems to be ok, but when looking at the DESCRIPTION file in e.g. https://github.com/cstrato/xps the first lines of DESCRIPTION looks as follows: Package: xps <<<<<<< HEAD Version: 1.41.2 ======= Version: 1.41.0
aae14d1351c754876880f9b50af9da70f80034ce
Should I keep this DESCRIPTION file or delete the additional lines or update the DESCRIPTION file again? Best regards, Christian
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