[Bioc-devel] bsseqData
Hi Nitesh, I did a fresh clone, updated the package, and committed the changes, but am still unable to push to the bioc git repo. Requested output below. $ git clone git at git.bioconductor.org:packages/bsseqData # Make updates and commit $ git push origin master Counting objects: 7, done. Delta compression using up to 4 threads. Compressing objects: 100% (7/7), done. Writing objects: 100% (7/7), 67.52 MiB | 1.35 MiB/s, done. Total 7 (delta 2), reused 0 (delta 0) remote: Error: file larger than 5 Mb. remote: remote: File name: 'data/BS.cancer.ex.fit.rda' remote: File size: 41.5 Mb remote: remote: Please see Biocondcutor guidelines remote: https://bioconductor.org/developers/package-guidelines/ remote: To git.bioconductor.org:packages/bsseqData ! [remote rejected] master -> master (pre-receive hook declined) error: failed to push some refs to 'git at git.bioconductor.org:packages/bsseqData' $ git remote -v origin git at git.bioconductor.org:packages/bsseqData (fetch) origin git at git.bioconductor.org:packages/bsseqData (push) $ tree .git/hooks/ .git/hooks/ ??? applypatch-msg.sample ??? commit-msg.sample ??? post-update.sample ??? pre-applypatch.sample ??? pre-commit.sample ??? pre-push.sample ??? pre-rebase.sample ??? pre-receive.sample ??? prepare-commit-msg.sample ??? update.sample $ git branch -a * master remotes/origin/HEAD -> origin/master remotes/origin/RELEASE_2_13 remotes/origin/RELEASE_2_14 remotes/origin/RELEASE_3_0 remotes/origin/RELEASE_3_1 remotes/origin/RELEASE_3_2 remotes/origin/RELEASE_3_3 remotes/origin/RELEASE_3_4 remotes/origin/RELEASE_3_5 remotes/origin/RELEASE_3_6 remotes/origin/RELEASE_3_7 remotes/origin/master $ git log commit 5eb4c1ebc03fb1d713e873a77570744b94dc7659 Author: Peter Hickey <peter.hickey at gmail.com> Date: Wed May 2 13:14:24 2018 -0400 Run updateObject() on serialized objects commit 153db702379b926743f26012a34c8076b37f91f9 Author: Nitesh Turaga <nitesh.turaga at gmail.com> Date: Mon Apr 30 10:34:47 2018 -0400 bump x.y.z versions to odd y after creation of RELEASE_3_7 branch commit e02c0503b1f75b5ec4caffd055645d3b060d2af9 Author: Nitesh Turaga <nitesh.turaga at gmail.com> Date: Mon Apr 30 10:31:27 2018 -0400 bump x.y.z versions to even y prior to creation of RELEASE_3_7 branch commit 3f87e4d027264396bdeeeb87baa68fb3b6662b46 Author: Peter Hickey <peter.hickey at gmail.com> Date: Sun Apr 29 12:31:34 2018 -0400 Bump minimum version of bsseq # git log output continues On Wed, 2 May 2018 at 11:36 Turaga, Nitesh
<Nitesh.Turaga at roswellpark.org> wrote:
Hi Pete,
Can you try once again please? And this time send me the following information if it doesn?t work.
git remote -v
and
ls -r (or tree) .git/hooks/
and
git branch -a
Thanks,
Nitesh
On Apr 29, 2018, at 11:22 PM, Peter Hickey <peter.hickey at gmail.com> wrote: Sure thing, we'll wait. Thanks, Val On Sun., 29 Apr. 2018, 9:01 pm Obenchain, Valerie, <Valerie.Obenchain at roswellpark.org> wrote: Hi guys, I'm not sure if this got resolved. If it didn't, I'd recommend waiting until after the 3.7 branching tomorrow. Thanks. Val On 04/29/2018 09:37 AM, Peter Hickey wrote:
I'm still unable to push large files after a fresh clone. I *am* able to push smaller changes (I just tweaked the DESCRIPTION to test this). But I get the "Error: file larger than 5 Mb" error when I try to update larger objects (e.g., BS.cancer.ex.fit.rda which is 40.8 Mb). On Sun, 29 Apr 2018 at 11:43 Turaga, Nitesh <Nitesh.Turaga at roswellpark.org> wrote: Can you try with a fresh clone of the repo? Best, Nitesh
On Apr 29, 2018, at 10:21 AM, Peter Hickey <peter.hickey at gmail.com> wrote: Nitesh, I am still getting the "Error: file larger than 5 Mb" error. On Sun, 29 Apr 2018 at 09:59 Turaga, Nitesh <Nitesh.Turaga at roswellpark.org> wrote: Hi Pete, This should be resolved now. Best, Nitesh
On Apr 29, 2018, at 9:50 AM, Peter Hickey <peter.hickey at gmail.com> wrote: Thanks, Val. I'm getting an error about "too large files" when I try to push (see below). Is there a different workflow for pushing an experiment data package or am I doing something else wrong? bsseqData predates the svn -> git transition. Thanks, Pete $ git push origin master Counting objects: 7, done. Delta compression using up to 4 threads. Compressing objects: 100% (7/7), done. Writing objects: 100% (7/7), 66.80 MiB | 693.00 KiB/s, done. Total 7 (delta 2), reused 0 (delta 0) remote: Error: file larger than 5 Mb. remote: remote: File name: 'data/BS.cancer.ex.fit.rda' remote: File size: 40.8 Mb remote: remote: Please see Biocondcutor guidelines remote: https://bioconductor.org/developers/package-guidelines/ remote: To git.bioconductor.org:packages/bsseqData.git ! [remote rejected] master -> master (pre-receive hook declined) error: failed to push some refs to 'git at git.bioconductor.org:packages/bsseqData.git' On Sat, 28 Apr 2018 at 19:17 Obenchain, Valerie < Valerie.Obenchain at roswellpark.org> wrote:
I've just given you and Pete access. Please give it a try and let me know
if you have problems.
Val
On 04/28/2018 10:50 AM, Kasper Daniel Hansen wrote:
Could Pete and I get write access to bsseqData?
Best,
Kasper
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