Message-ID: <A162684E-50B6-4378-B2AE-1E2BBEE2E159@wehi.edu.au>
Date: 2019-01-14T04:39:21Z
From: Shian Su
Subject: [Bioc-devel] What is good convention for package-local BiocParallel param?
In-Reply-To: <55647EEA-BA22-4A50-A1F0-FC0E1A6B9EB0@gmail.com>
This is for my work-in-progress package CellBench: https://github.com/Shians/CellBench, it?s a benchmarking framework for testing combinations of methods in a pipeline. Its intended use looks like
data %>%
apply_methods(method_list1) %>%
apply_methods(method_list2) %>%
apply_methods(method_list3)
etc...
Where multiple methods at each stop is applied in a combinatorial fashion resulting in results from computations from each combination of methods at each step.
At the moment I am working on error logging with stop.on.error = FALSE, and I really don?t want to impose this option on other packages using BiocParallel.