Message-ID: <CABbazM=9_9yPjcf9a_WSgsmeUWN08qzgho557PNkk=0BoFJp3A@mail.gmail.com>
Date: 2019-09-14T21:25:30Z
From: Tiago Lubiana Alves
Subject: [Bioc-devel] Error in HDF5 - Package submission - Not detected locally
Hello,
I am having a problem with a package submission build.
This is the package issue:
https://github.com/Bioconductor/Contributions/issues/1241
And this is the ERROR:
HDF5-DIAG: Error detected in HDF5 (1.10.5) thread 0:
#000: C:/hdf5_build/CMake-hdf5-1.10.5/hdf5-1.10.5/src/H5F.c line 509
in H5Fopen(): unable to open file
major: File accessibilty
minor: Unable to open file
#001: C:/hdf5_build/CMake-hdf5-1.10.5/hdf5-1.10.5/src/H5Fint.c line
1498 in H5F_open(): unable to open file: time = Fri Sep 13 15:05:35
2019
, name = '/home/lubianat/.cache/ExperimentHub/5486ffbe0e3_1605', tent_flags = 0
(...)
Quitting from lines 46-51 (fcoex.Rmd)
Error: processing vignette 'fcoex.Rmd' failed with diagnostics:
failed to open file '/home/lubianat/.cache/ExperimentHub/5486ffbe0e3_1605'
--- failed re-building 'fcoex.Rmd'
It looks like something is pointing in the wrong direction, but I have not
been able to figure out exactly what. I've tried re-saving the data file
("mini_pbmc3k"), which is loaded in the vignette chunk of the error, but
that did not help.
Does anyone have a suggestion of what might be happening?
Thank you very much for your time,
Best,
Tiago
Tiago Lubiana
Mestrando em Bioinform?tica, FCF/USP
*Computational Systems Biology Laboratory (CSBL)*
Telefone (laborat?rio): +55 (11) 2648-0240
Telefone (pessoal): +55 (11) 954258000
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