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Bioc-devel September 2019

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Monday, September 30, 2019 9 emails
Richard Virgen-Slane Querying web resources slow in Windows Turaga, Nitesh Large file problem in git Hervé Pagès Large file problem in git Alberto Valdeolivas Querying web resources slow in Windows Graw, Stefan H pwrEWAS - checkResults error Shepherd, Lori pwrEWAS - checkResults error Cuklina Jelena Large file problem in git Graw, Stefan H pwrEWAS - checkResults error Shepherd, Lori Deadline for commits to current Release 3.9 Branch and Devel 3.10
Thursday, September 26, 2019 6 emails
Hervé Pagès Reference manual as HTML Laurent Gatto Reference manual as HTML Hervé Pagès Reference manual as HTML Martin Maechler Reference manual as HTML Laurent Gatto Reference manual as HTML Florian J. Auer ndexr fails on vignette build on windows
Wednesday, September 25, 2019 8 emails
Martin Morgan Reference manual as HTML Henrik Bengtsson Reference manual as HTML Stuart Lee Reference manual as HTML Martin Morgan Reference manual as HTML Martin Morgan Error building Vignnette in Bioconductor Windows server when Submitting a new package Laurent Gatto Reference manual as HTML Ludwig Geistlinger Reference manual as HTML Alberto Valdeolivas Error building Vignnette in Bioconductor Windows server when Submitting a new package
Thursday, September 19, 2019 4 emails
Shepherd, Lori Push not triggering new builds neither updating package Tiago Lubiana Alves Push not triggering new builds neither updating package Shepherd, Lori Bioc_since shield broken for packages accepted <6 months ago Shepherd, Lori Bioc_since shield broken for packages accepted <6 months ago
Wednesday, September 18, 2019 9 emails
Ahmed Mohamed Bioc_since shield broken for packages accepted <6 months ago Aedin Culhane Organizing committee for BioC2020 Michael Lawrence read_bed() Bhagwat, Aditya read_bed() Bhagwat, Aditya read_bed() Michael Lawrence read_bed() Bhagwat, Aditya read_bed() Bhagwat, Aditya read_bed() Bhagwat, Aditya read_bed()
Tuesday, September 17, 2019 24 emails
Bhagwat, Aditya read_bed() Leonardo Collado Torres Is biocLite() working for you right now? Could be a problem on our side. Issue with DelayedArray install with a PC on R 3.5.0 Michael Lawrence read_bed() Hervé Pagès TissueEnrich problems reported in the Multiple platform build/check report for BioC 3.9 Hervé Pagès which web browser on the linux build machines? was Re: R environment variable which indicates "running in the bioc build system"? Ashish Jain TissueEnrich problems reported in the Multiple platform build/check report for BioC 3.9 Bhagwat, Aditya read_bed() Christian Mertes Failing to build vignette because of problems with ImageMagick Christian Mertes read.table fails with https protocol Paul Shannon which web browser on the linux build machines? was Re: R environment variable which indicates "running in the bioc build system"? Bhagwat, Aditya read_bed() Michael Lawrence read_bed() Bhagwat, Aditya read_bed() Michael Lawrence read_bed() Bhagwat, Aditya read_bed() Michael Lawrence read_bed() Bhagwat, Aditya read_bed() Shepherd, Lori TissueEnrich problems reported in the Multiple platform build/check report for BioC 3.9 Michael Lawrence read_bed() Bhagwat, Aditya read_bed() Bhagwat, Aditya read_bed() Shepherd, Lori read_bed() Bhagwat, Aditya read_bed() Bhagwat, Aditya Extending GenomicRanges::`intra-range-methods`
Monday, September 16, 2019 12 emails
Stuart Lee Extending GenomicRanges::`intra-range-methods` Hervé Pagès Error in HDF5 - Package submission - Not detected locally Peter Hickey Error in HDF5 - Package submission - Not detected locally Shepherd, Lori New Package Submission Deadline for Bioc Release 3.10 Shepherd, Lori Bioconductor 3.10 release schedule Ashish Jain TissueEnrich problems reported in the Multiple platform build/check report for BioC 3.9 Michael Lawrence Extending GenomicRanges::`intra-range-methods` Tiago Lubiana Alves Error in HDF5 - Package submission - Not detected locally Bhagwat, Aditya Extending GenomicRanges::`intra-range-methods` Mike Smith Error in HDF5 - Package submission - Not detected locally Bhagwat, Aditya Extending GenomicRanges::`intra-range-methods` Bhagwat, Aditya Extending GenomicRanges::`intra-range-methods`
Sunday, September 15, 2019 1 email
Paul Shannon R environment variable which indicates "running in the bioc build system"?
Saturday, September 14, 2019 1 email
Tiago Lubiana Alves Error in HDF5 - Package submission - Not detected locally
Friday, September 13, 2019 13 emails
Pierrick Roger new package for accessing some chemical and biological databases Henrik Bengtsson Duplicated method names in purrr and GenomicRanges Hervé Pagès new package for accessing some chemical and biological databases Mike Smith new package for accessing some chemical and biological databases Shepherd, Lori Experiment package does not appear in build report Kasper Daniel Hansen new package for accessing some chemical and biological databases Éric Fournier Experiment package does not appear in build report Martin Morgan new package for accessing some chemical and biological databases bioi@i m@iii@g oii posteo@de Duplicated method names in purrr and GenomicRanges Michael Lawrence Extending GenomicRanges::`intra-range-methods` Bhagwat, Aditya Extending GenomicRanges::`intra-range-methods` Shepherd, Lori DMRcate_2.0.0 and updated DMRcatedata Hervé Pagès Problems with converting GPos to GRanges.
Thursday, September 12, 2019 21 emails
Charles Plessy Problems with converting GPos to GRanges. Tim Peters DMRcate_2.0.0 and updated DMRcatedata Hervé Pagès R environment variable which indicates "running in the bioc build system"? Paul Shannon R environment variable which indicates "running in the bioc build system"? Hervé Pagès R environment variable which indicates "running in the bioc build system"? Paul Shannon R environment variable which indicates "running in the bioc build system"? Shepherd, Lori Change package name Cook, Malcolm Duplicated method names in purrr and GenomicRanges Richard Virgen-Slane Duplicated method names in purrr and GenomicRanges Liu, Qian Duplicated method names in purrr and GenomicRanges Turaga, Nitesh DMRcate_2.0.0 and updated DMRcatedata Michael Lawrence Duplicated method names in purrr and GenomicRanges Bhagwat, Aditya Import BSgenome class without attaching BiocGenerics (and others)? Bhagwat, Aditya Import BSgenome class without attaching BiocGenerics (and others)? O'CALLAGHAN Alan Duplicated method names in purrr and GenomicRanges Bernat Gel Import BSgenome class without attaching BiocGenerics (and others)? bioi@i m@iii@g oii posteo@de Duplicated method names in purrr and GenomicRanges Bhagwat, Aditya Import BSgenome class without attaching BiocGenerics (and others)? Bernat Gel Import BSgenome class without attaching BiocGenerics (and others)? Ulrich Bodenhofer Troubles with Windows build Tim Peters DMRcate_2.0.0 and updated DMRcatedata
Wednesday, September 11, 2019 26 emails
Bernat Gel Import BSgenome class without attaching BiocGenerics (and others)? Michael Lawrence Import BSgenome class without attaching BiocGenerics (and others)? Hervé Pagès Troubles with Windows build Mike Smith Bioconductor Developers Forum - Thursday 19th September Hervé Pagès Failing to build vignette because of problems with ImageMagick Shepherd, Lori RGL warning Hervé Pagès Import BSgenome class without attaching BiocGenerics (and others)? Hervé Pagès Import BSgenome class without attaching BiocGenerics (and others)? Zhezhen Wang RGL warning Michael Lawrence Import BSgenome class without attaching BiocGenerics (and others)? Ulrich Bodenhofer Troubles with Windows build Kasper Daniel Hansen Failing to build vignette because of problems with ImageMagick Kasper Daniel Hansen RGL warning Bhagwat, Aditya Collapsing a GRangesList into a GRanges without loosing names(GRangesList) Bhagwat, Aditya Import BSgenome class without attaching BiocGenerics (and others)? Shepherd, Lori Collapsing a GRangesList into a GRanges without loosing names(GRangesList) Bhagwat, Aditya Collapsing a GRangesList into a GRanges without loosing names(GRangesList) Michael Lawrence Import BSgenome class without attaching BiocGenerics (and others)? Shepherd, Lori new package for accessing some chemical and biological databases Simon Dirmeier Reset to a previous commit Bhagwat, Aditya Import BSgenome class without attaching BiocGenerics (and others)? Hervé Pagès Import BSgenome class without attaching BiocGenerics (and others)? Hervé Pagès Failing to build vignette because of problems with ImageMagick Pierrick Roger new package for accessing some chemical and biological databases Bhagwat, Aditya Import BSgenome class without attaching BiocGenerics (and others)? Vincent Carey Failing to build vignette because of problems with ImageMagick
Tuesday, September 10, 2019 12 emails
Zhezhen Wang Error in .get_entry_index(name, stop_if_missing) Hervé Pagès Import BSgenome class without attaching BiocGenerics (and others)? Zhezhen Wang RGL warning Lulu Chen Change package name Christian Mertes Failing to build vignette because of problems with ImageMagick Turaga, Nitesh Reset to a previous commit Turaga, Nitesh Reset to a previous commit Turaga, Nitesh Update InterMineR maintainer Turaga, Nitesh Update InterMineR maintainer Simon Dirmeier Reset to a previous commit Neumann, Steffen Reset to a previous commit Simon Dirmeier Reset to a previous commit
Monday, September 9, 2019 2 emails
Kasper Daniel Hansen Failing to build vignette because of problems with ImageMagick Christian Mertes Failing to build vignette because of problems with ImageMagick
Friday, September 6, 2019 10 emails
Bhagwat, Aditya Import BSgenome class without attaching BiocGenerics (and others)? Michael Lawrence Import BSgenome class without attaching BiocGenerics (and others)? Bhagwat, Aditya Import BSgenome class without attaching BiocGenerics (and others)? Kasper Daniel Hansen Import BSgenome class without attaching BiocGenerics (and others)? Shepherd, Lori List of Deprecated Packages Bioc 3.10 Michael Lawrence Import BSgenome class without attaching BiocGenerics (and others)? Bhagwat, Aditya Import BSgenome class without attaching BiocGenerics (and others)? Bhagwat, Aditya Import BSgenome class without attaching BiocGenerics (and others)? Michael Lawrence Import BSgenome class without attaching BiocGenerics (and others)? Bhagwat, Aditya Import BSgenome class without attaching BiocGenerics (and others)?
Thursday, September 5, 2019 8 emails
Vincent Carey Build error due to TensorFlow installation Martin Morgan Build error due to TensorFlow installation Martin Morgan Version number error Kasper Daniel Hansen Build error due to TensorFlow installation Christopher John Version number error Simon Dirmeier Build error due to TensorFlow installation Martin Morgan Version number error Dirmeier Simon Build error due to TensorFlow installation
Wednesday, September 4, 2019 18 emails
Christopher John Version number error Hervé Pagès 'tokay1' error but passed other OS Venu Thatikonda 'tokay1' error but passed other OS Kasper Daniel Hansen 'tokay1' error but passed other OS Shepherd, Lori 'tokay1' error but passed other OS Venu Thatikonda 'tokay1' error but passed other OS Kasper Daniel Hansen 'tokay1' error but passed other OS Hervé Pagès 'tokay1' error but passed other OS Shepherd, Lori 'tokay1' error but passed other OS Kasper Daniel Hansen 'tokay1' error but passed other OS Venu Thatikonda 'tokay1' error but passed other OS Hervé Pagès Build error due to TensorFlow installation Turaga, Nitesh Version number error Shepherd, Lori Version number error Shepherd, Lori Version number error Christopher John Version number error Christopher John Version number update problem Hervé Pagès EXTERNAL: MultiAssayExperiment silently converting RangedSummarizedExperiments into SummarizedExperiments.
Tuesday, September 3, 2019 3 emails
Marcel Ramos EXTERNAL: MultiAssayExperiment silently converting RangedSummarizedExperiments into SummarizedExperiments. Simon Dirmeier Build error due to TensorFlow installation Shepherd, Lori Build error due to TensorFlow installation
Monday, September 2, 2019 1 email
Simon Dirmeier Build error due to TensorFlow installation