[Bioc-devel] GEOquery Warnings When Reading SOFT File
Hi Dario, This isn't the right forum for your question (this listserv is for development of packages, not questions about existing packages), so you should ask on the support site. Best, Jim On Thu, Feb 19, 2015 at 1:00 AM, Dario Strbenac <dstr7320 at uni.sydney.edu.au> wrote:
library(GEOquery)
gastricChina <- getGEO("GSE65801", GSEMatrix = FALSE)
Generates warnings
head(warnings(), 1)
Warning message: In readLines(con, n = chunksize) : seek on a gzfile connection returned an internal error Does it affect the correctness of the imported data ? Also, experimentData(gastricChina) gives an empty result Experiment data Experimenter name: Laboratory: Contact information: Title: URL: PMIDs: No abstract available. whereas some of the fields are filled in on the webpage. -------------------------------------- Dario Strbenac PhD Student University of Sydney Camperdown NSW 2050 Australia
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