[Bioc-devel] Missing knitcitations package on devel for PharmacoGx
This problem has been recognized: https://github.com/cboettig/knitcitations/issues/107 In a few days it will likely clear. On Wed, Nov 25, 2020 at 10:26 PM Eeles, Christopher <
Christopher.Eeles at uhnresearch.ca> wrote:
Hello Bioc community,
I am the maintainer for PharmacoGx and have noticed that I have an error
on all platforms of the devel branch related to the knitcitations package.
* checking for file ?PharmacoGx/DESCRIPTION? ... OK
* preparing ?PharmacoGx?:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ?CreatingPharmacoSet.Rmd? using rmarkdown
Quitting from lines 79-82 (CreatingPharmacoSet.Rmd)
Error: processing vignette 'CreatingPharmacoSet.Rmd' failed with
diagnostics:
there is no package called 'knitcitations'
--- failed re-building ?CreatingPharmacoSet.Rmd?
--- re-building ?PharmacoGx.Rmd? using rmarkdown
Quitting from lines 79-82 (PharmacoGx.Rmd)
Error: processing vignette 'PharmacoGx.Rmd' failed with diagnostics:
there is no package called 'knitcitations'
--- failed re-building ?PharmacoGx.Rmd?
SUMMARY: processing the following files failed:
?CreatingPharmacoSet.Rmd? ?PharmacoGx.Rmd?
Error: Vignette re-building failed.
Execution halted
The package builds fine on the release branch with the same vignettes and
knitcitations in the suggests field of the description.
Any advice on how I can fix this? It seems like my suggests aren't being
installed on the devel branch.
Thanks for your assistance.
Best,
Christopher Eeles
Software Developer
Benjamin Haibe-Kains Lab
Princess Margaret Cancer Centre
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