[Bioc-devel] Recently accepted package not appearing in nightly builds
OK that makes sense - apologies, it stated in the issue that "Your package will be included in the next nigthly 'devel' build" and I misinterpreted. Thanks for clarifying! Cheers On Tue, 23 Mar 2021 at 11:40, Kern, Lori <Lori.Shepherd at roswellpark.org> wrote:
Your package was identified as a workflow package based you the biocViews you selected. The workflow packages did not build last Friday and next run is today. You should check the following page for your workflow package build results: http://bioconductor.org/checkResults/3.13/workflows-LATEST/ Cheers, Lori Shepherd Bioconductor Core Team Roswell Park Comprehensive Cancer Center Department of Biostatistics & Bioinformatics Elm & Carlton Streets Buffalo, New York 14263 ------------------------------ *From:* Bioc-devel <bioc-devel-bounces at r-project.org> on behalf of James Perkins <jimrperkins at gmail.com> *Sent:* Tuesday, March 23, 2021 4:56 AM *To:* bioc-devel at r-project.org <bioc-devel at r-project.org> *Subject:* [Bioc-devel] Recently accepted package not appearing in nightly builds Dear all, I am the maintainer of the package ExpHunterSuite. This was accepted thursday, and on Friday (19/03) the issue raised on the Bioconductor/contributions github page was closed (ExpHunterSuite #1835, https://secure-web.cisco.com/1a7OEZThEU5CLG0ISAyz_rsGl1YpZjHKnXob4DK82SC1JJXcRPx9JMXNkXz1BoRbKGnTU16yAlQ5pxjB_ANH8w_aa7enwKmKs4CrPWV2DIRnf64J8C_Lhv0ugJynT40zYGYvnMURwRkKdVkl6VQUN2TV6FOEZMltNMg5KNAYlJYA-Qo5V1d8V364L_NtC7Hs3h53CQMaahEFYbnPZih0SCXCwr7dpQ1B5RgYukVSwcBhhVqp7co3pHFwSf6V0eSwpKYom_kndyBFBm0cyHnhj8_EWY2fkeezxmDUDkxKui2AspIQiJD_QH9Cmzdt23zLx7kPS8OV2mQJmaLyhQWO1rA/https%3A%2F%2Fgithub.com%2FBioconductor%2FContributions%2Fissues%2F1835 ). The last message on the issue thread told me that the package will be included in the next nightly build, to keep an eye on the results and that, assuming it builds OK, a landing page will be produced. There was also information in the message related to git ssh credentials, but I believe that is already solved (I have submitted public key and can clone/push/pull the git.bioconductor.org repo without problems). I've checked the nightly build since then, and it would appear that the package has not been included. The latest one uses a git snapshot from 21/03 so I assume it should be included? I know that there have been problems with the devel build as per Herv? Pag?s's email, I don't know if this is affecting things, or if there is something else I have to do, like a bump in version number to trigger inclusion or something like that? Thanks in advance for any help. Jim -- James R Perkins PhD Post-Doctoral Researcher, Rare Diseases Research Network (CIBERER) Department of Molecular Biology and Biochemistry < https://secure-web.cisco.com/1qJv3gjRb73fkHwItMi7qDYMMMWR_A-afmoGmIQqs68gSEM2Yj_7v-FmFl47C8LVnUGRZQk53-KIAamfJbg2MscBbFYmpJLobhN6mPNbBcaCWqvjFnObTga8eBYSGP45GeL1q0GTGkwf2BFbrDJh3w5IoFOS8dtH8icBLzc-u5pMiDV24xOmw3F0vzDpiJwE_3kQ9PeEkxfaCPqcaNR83tVHYdzT90Fi3gczR4cvs-TMLujB-g8QecNVAm2AM0EAT8wd0_Q3uRX3Ts-8YMjjOiLMnbQn9OdpTFKY_8vmJsRg3kOYpbYtQz6DYW0wco7uhuFVqjuZBxzyCggvaCoLEfA/https%3A%2F%2Fgoo.gl%2Fmaps%2FUCLQXZLR2W12
Science Faculty, University of Malaga
29071 Malaga, Spain
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James R Perkins PhD Post-Doctoral Researcher, Rare Diseases Research Network (CIBERER) Department of Molecular Biology and Biochemistry <https://goo.gl/maps/UCLQXZLR2W12> Science Faculty, University of Malaga 29071 Malaga, Spain [[alternative HTML version deleted]]