[Bioc-devel] docker build failure when installing dependencies

Dear all,

I would like to reproduce a build error (on Bioc devel) using docker. The
issue is that the docker image fails to build. I use the following
Dockerfile:

FROM bioconductor/bioconductor_docker:devel
RUN install2.r --error broom.mixed\
BiocManager \
devtools \
dirmult\
fitdistrplus\
lme4\
MASS\
mice\
multcomp\
survival\
knitr\
rmarkdown\
testthat
RUN R -e ' BiocManager::install(version = '3.13',ask=FALSE) ;

BiocManager::install(c("BiocParallel","BiocStyle","diffcyt","S4Vectors","SummarizedExperiment"),version="3.13",ask=FALSE)'

And then build with:

docker build --pull .

Which gives the following error:

1: In install.packages(...) :
installation of package ?flowWorkspace? had non-zero exit status
2: In install.packages(...) :
installation of package ?ggcyto? had non-zero exit status
3: In install.packages(...) :
installation of package ?flowStats? had non-zero exit status
4: In install.packages(...) :
installation of package ?openCyto? had non-zero exit status
5: In install.packages(...) :
installation of package ?CytoML? had non-zero exit status
6: In install.packages(...) :
installation of package ?FlowSOM? had non-zero exit status
7: In install.packages(...) :
installation of package ?diffcyt? had non-zero exit status

What am I doing wrong? (according to the build report on malbec2 this
should work)
Thanks for the help!

(I try to reproduce the error for the package censcyt
http://bioconductor.org/checkResults/devel/bioc-LATEST/censcyt/ )

Best,
Reto
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