[Bioc-devel] NanoStringDiff package update

Sorry for the delay.  Please try again. We have just processed the keys
again and it should be accessible.  If you continue to have issues please
reply all so that it stays on the devel mailing list thread and other
members of the team can also assist.


Cheers


Lori Shepherd

Bioconductor Core Team

Roswell Park Cancer Institute

Department of Biostatistics & Bioinformatics

Elm & Carlton Streets

Buffalo, New York 14263
------------------------------
*From:* Zhai, Tingting <tingting.zhai at uky.edu>
*Sent:* Thursday, January 25, 2018 9:49:47 AM
*To:* Shepherd, Lori
*Subject:* Re: [Bioc-devel] NanoStringDiff package update

Hi Lori,
You are so helpful! I really appreciate it!
I submitted the form you mentioned above two days ago (Jan. 23). But when
I run "git clone git at git.bioconductor.org:packages/NanoStringDiff.git", I
still get the error that "Permission denied (publickey).
fatal: Could not read from remote repository." Does it mean that my key
has not been added to your system?

Thank you again for your help.


Best wishes,
Tingting




On Thu, Jan 25, 2018 at 7:13 AM, Shepherd, Lori <
Lori.Shepherd at roswellpark.org> wrote:

Bioconductor has switched from svn to git, and was announced back in
August 2017, so you are correct that you are no longer able to use svn to
upload changes to the new location for the Bioconductor repository


git.bioconductor.org


You don't have to use github to maintain your package locally (we do
recommend it but not necessary) but we do require git for maintaining the
Bioconductor canonical location.  There are lots of scenarios and useful
FAQ section on the Bioconductor website


http://bioconductor.org/developers/how-to/git/


Create a new GitHub repository tutorial - will take you through how to
convert an existing directory onto github and how to maintain the two
locations (local github and bioconductor git location)


Maintain a Bioconductor-only repository  tutorial - will take you through
how to link to the Bioconductor git.bioconductor.org repository without
creating a github.


There are many tutorials with how to push changes and how to pull from the
Bioconductor repo (after a release happens this is necessary) and how to
trouble shoot common issues.


The first step will be to submit an id and ssh-key to the following form
to gain access to the package


https://docs.google.com/forms/d/1CCwUhjtG82rnmcTWYqY43WcmBx5
YyQm5UD4pcs1dhEs/viewform?edit_requested=true


You will need to enter your email -  because you had an svn account your
svn.id - and a ssh public key -


Cheers,



Lori Shepherd

Bioconductor Core Team

Roswell Park Cancer Institute

Department of Biostatistics & Bioinformatics

Elm & Carlton Streets

Buffalo, New York 14263
------------------------------
*From:* Bioc-devel <bioc-devel-bounces at r-project.org> on behalf of Zhai,
Tingting <tingting.zhai at uky.edu>
*Sent:* Wednesday, January 24, 2018 2:17:17 PM
*To:* bioc-devel at r-project.org
*Subject:* [Bioc-devel] NanoStringDiff package update

I?m one of the maintainers of NanoStringDiff package on Bioconductor. Now I
want to update this package and add some useful functions. I?m using SVN,
but when committing, it gives me this error: The new canonical location for
Bioconductor software and

data experiment packages is git.bioconductor.org


The recommended way to maintain your Bioconductor software

or data experiment package is to use GitHub.



Does this mean I?m not able to use SVN to maintain my package any more? I?m
not familiar with github.


Thank you very much for any help in advance.


Best wishes,

Tingting

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