Message-ID: <DS7PR13MB45901B207F7972F7058F80EEA3919@DS7PR13MB4590.namprd13.prod.outlook.com>
Date: 2021-03-10T14:11:28Z
From: Nitesh Turaga
Subject: [Bioc-devel] bioconductor_docker:devel missing MAE and GenomeInfoDb
In-Reply-To: <AM0PR03MB3635E430A726D4B597842A1C91929@AM0PR03MB3635.eurprd03.prod.outlook.com>
Hi Laurent,
Since you are using the devel version of `bioconductor_docker` it's possible that the packages failed to build on the build system.
For example, http://bioconductor.org/checkResults/devel/bioc-LATEST/MultiAssayExperiment/ , MultiAsssayExperiment failed to build on devel. A better solution for this, is to use the release 3.12 version of 'bioconductor_docker:RELEASE_3_12'.
This may be transient, and could be fixed by the maintainers.
Best,
Nitesh
?On 3/9/21, 4:51 PM, "Bioc-devel on behalf of Laurent Gatto" <bioc-devel-bounces at r-project.org on behalf of laurent.gatto at uclouvain.be> wrote:
I am setting up a repo/docker for the coming Bioc2021 workshops, and apparently packages ?GenomeInfoDb?, ?MultiAssayExperiment? are not available for this version of R [1] (they indeed fail on devel). Surprisingly, they seemed to be available earlier in the day - my action failed for a different reason, much later in the process.
Laurent
[1] https://github.com/lgatto/QFeaturesScpWorkshop2021/runs/2070746544?check_suite_focus=true#step:8:157
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