[Bioc-devel] error regarding splitAsList from IRanges packages
Hi Felix, Another temporary glitch introduced in devel by some recent changes to S4Vectors/IRanges, sorry. I think I fixed all the affected packages (was going to fix RNAmodR too but you beat me to it ;-) ). No more splitAsList related issues on today's build report :-) Cheers, H.
On 6/7/19 10:39, Felix Ernst wrote:
Hi I have a build error for RNAmodR package, which was just added to the Bioc git repo and was build for the first time for 3.10. https://urldefense.proofpoint.com/v2/url?u=https-3A__bioconductor.org_checkResults_3.10_bioc-2DLATEST&d=DwIFaQ&c=eRAMFD45gAfqt84VtBcfhQ&r=BK7q3XeAvimeWdGbWY_wJYbW0WYiZvSXAJJKaaPhzWA&m=8prfnXvxKeaF5nBXFPkZu-YTgwJ3uhMTeUOk44L8DPU&s=nUfzBXboeDlTdiYJYbEd92E8GKN127Qtor_YYjQqzYE&e=
No methods found in package ?IRanges? for request: ?splitAsList? when loading ?ensembldb? Error: object 'splitAsList' is not exported by 'namespace:IRanges'
I never encountered this particular error during the review process so I am bit out of my depth. If I read this error correctly, it was triggered trying to load the ensembldb package (which is an indirect dependency). However, ensembldb did build correctly and splitAsList is as far as I know also exported from IRanges. IRanges also build correctly. Thanks for any advice or a pointer, how I can debug this? Best regards, Felix [[alternative HTML version deleted]]
_______________________________________________ Bioc-devel at r-project.org mailing list https://urldefense.proofpoint.com/v2/url?u=https-3A__stat.ethz.ch_mailman_listinfo_bioc-2Ddevel&d=DwICAg&c=eRAMFD45gAfqt84VtBcfhQ&r=BK7q3XeAvimeWdGbWY_wJYbW0WYiZvSXAJJKaaPhzWA&m=8prfnXvxKeaF5nBXFPkZu-YTgwJ3uhMTeUOk44L8DPU&s=KrrqI0N9OfEDvqfNppPo2lHmvh53-fJGyDyAz2XvMf8&e=
Herv? Pag?s Program in Computational Biology Division of Public Health Sciences Fred Hutchinson Cancer Research Center 1100 Fairview Ave. N, M1-B514 P.O. Box 19024 Seattle, WA 98109-1024 E-mail: hpages at fredhutch.org Phone: (206) 667-5791 Fax: (206) 667-1319