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Bioc-devel June 2019

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Sunday, June 30, 2019 2 emails
Sean Davis Problem downloading files with GenomicDataCommons Koustav Pal Problem downloading files with GenomicDataCommons
Thursday, June 27, 2019 2 emails
Turaga, Nitesh Biconductor Git Credentials Federico, Anthony, Nicholas Biconductor Git Credentials
Wednesday, June 26, 2019 2 emails
Martin Morgan where is 3.9 version? lejeczek where is 3.9 version?
Tuesday, June 25, 2019 7 emails
Aaron Lun package test failing due to CSAW dong xiaoxi SBGNview package build error: data package not available. (SBGNview.data not in build/check results) Hervé Pagès SBGNview package build error: data package not available. (SBGNview.data not in build/check results) Shepherd, Lori Error No internet connection using 'localHub=TRUE' during FlowSorted.CordBloodCombined.450k package installation Shepherd, Lori SBGNview package build error: data package not available. (SBGNview.data not in build/check results) Vincent Carey banocc problems reported in the Multiple platform build/check report for BioC 3.9 Vivek Bhardwaj package test failing due to CSAW
Monday, June 24, 2019 6 emails
Hervé Pagès CHECK ERROR in tokay1 for BioC 3.10 George Weingart banocc problems reported in the Multiple platform build/check report for BioC 3.9 Hervé Pagès No such file or directory: BSgenome.Hsapiens.UCSC.hg38/extdata/single_sequences.2bit Paul Shannon No such file or directory: BSgenome.Hsapiens.UCSC.hg38/extdata/single_sequences.2bit Lucas A. Salas Diaz Error No internet connection using 'localHub=TRUE' during FlowSorted.CordBloodCombined.450k package installation Benjamin Tremblay LaTeX errors when creating PDF version [tokay1]
Sunday, June 23, 2019 1 email
dong xiaoxi SBGNview package build error: data package not available. (SBGNview.data not in build/check results)
Tuesday, June 18, 2019 7 emails
Dario Strbenac how to achieve reproducibility with BiocParallel regardless of number of threads and OS (set.seed is disallowed) Paul Shannon Error in .seqlengths_TwoBitFile(x) : UCSC library operation failed Gordon K Smyth Error for voom() in limma package Zhu, Lihua (Julie) help with accessing CRISPRseek Zhu, Lihua (Julie) help with accessing CRISPRseek James W. MacDonald Error for voom() in limma package Lan Huong Nguyen Error for voom() in limma package
Monday, June 17, 2019 6 emails
Lan Huong Nguyen failing package TimeSeriesExperiment Sidharth Jain Linking packages in man pages Martin Morgan Linking packages in man pages Sidharth Jain Linking packages in man pages Martin Morgan Linking packages in man pages Sidharth Jain Linking packages in man pages
Friday, June 14, 2019 14 emails
Shraddha Pai get_dcf_info failed and build intervals Hervé Pagès get_dcf_info failed and build intervals Shraddha Pai get_dcf_info failed and build intervals Hervé Pagès get_dcf_info failed and build intervals Shraddha Pai get_dcf_info failed and build intervals Hervé Pagès get_dcf_info failed and build intervals Shraddha Pai get_dcf_info failed and build intervals Turaga, Nitesh updating package ostrov@i m@iii@g oii mskcc@org updating package Shepherd, Lori CHECK ERROR in tokay1 for BioC 3.10 Jianhong Ou, Ph.D. CHECK ERROR in tokay1 for BioC 3.10 Jianhong Ou, Ph.D. CHECK ERROR in tokay1 for BioC 3.10 Shepherd, Lori CHECK ERROR in tokay1 for BioC 3.10 Aaron Lun scRNAseq upgrade: give us your single-cell data!
Thursday, June 13, 2019 4 emails
Shraddha Pai Github repo with multiple BioC packages Turaga, Nitesh Github repo with multiple BioC packages Jianhong Ou, Ph.D. CHECK ERROR in tokay1 for BioC 3.10 Shraddha Pai Github repo with multiple BioC packages
Wednesday, June 12, 2019 4 emails
Hervé Pagès normalize_names_replacement_value error with colnames<- on SummarizedExperiment Vincent Carey normalize_names_replacement_value error with colnames<- on SummarizedExperiment Vincent Carey normalize_names_replacement_value error with colnames<- on SummarizedExperiment Ramon Diaz-Uriarte package that will not build under Windows with Rtools35 (but works with Rtools40)
Tuesday, June 11, 2019 7 emails
Hervé Pagès package that will not build under Windows with Rtools35 (but works with Rtools40) Hervé Pagès error regarding splitAsList from IRanges packages Hervé Pagès new error with saved HDF5SummarizedExperiment Leonardo Collado Torres Event addition request: CDSB Workshop 2019 in Cuernavaca, Mexico Martin Morgan Best way to locally troubleshoot Malbec, Tokay, or Merida build errors Odom, Gabriel J Best way to locally troubleshoot Malbec, Tokay, or Merida build errors Shepherd, Lori Event addition request: CDSB Workshop 2019 in Cuernavaca, Mexico
Monday, June 10, 2019 4 emails
Leonardo Collado Torres Event addition request: CDSB Workshop 2019 in Cuernavaca, Mexico Shepherd, Lori Write access to scRNAseq Davide Risso Write access to scRNAseq Nicolas Descostes verification on configuration
Sunday, June 9, 2019 5 emails
Lily Wang package submission question Shepherd, Lori package submission question Lily Wang package submission question Martin Morgan Bioconductor package review Lluís Revilla Bioconductor package review
Friday, June 7, 2019 7 emails
Vincent Carey new error with saved HDF5SummarizedExperiment Felix Ernst error regarding splitAsList from IRanges packages Shepherd, Lori BioC 3.10 build report shapshot is stacked on Tuesday 04 Jun Shepherd, Lori verification on configuration Nicolas Descostes verification on configuration Shepherd, Lori List of Deprecated Packages Bioc 3.10 Carmen M. Livi BioC 3.10 build report shapshot is stacked on Tuesday 04 Jun
Thursday, June 6, 2019 2 emails
Turaga, Nitesh My address is not associated with a maintainer. Damian Szklarczyk My address is not associated with a maintainer.
Tuesday, June 4, 2019 3 emails
Koustav Pal Possible need for a GenomicIntersection package Éric Fournier Possible need for a GenomicIntersection package Ramon Diaz-Uriarte package that will not build under Windows with Rtools35 (but works with Rtools40)