Message-ID: <6d2bb5e6-3eb2-45f3-152c-7ca73a0a81ee@fredhutch.org>
Date: 2019-06-11T19:08:49Z
From: Hervé Pagès
Subject: [Bioc-devel] error regarding splitAsList from IRanges packages
In-Reply-To: <AM0PR0502MB38746AE6AA1ED0317F66992AD6100@AM0PR0502MB3874.eurprd05.prod.outlook.com>
Hi Felix,
Another temporary glitch introduced in devel by some recent
changes to S4Vectors/IRanges, sorry. I think I fixed all the
affected packages (was going to fix RNAmodR too but you beat
me to it ;-) ). No more splitAsList related issues on today's
build report :-)
Cheers,
H.
On 6/7/19 10:39, Felix Ernst wrote:
> Hi
>
> I have a build error for RNAmodR package, which was just added to the Bioc git repo and was build for the first time for 3.10.
>
> https://urldefense.proofpoint.com/v2/url?u=https-3A__bioconductor.org_checkResults_3.10_bioc-2DLATEST&d=DwIFaQ&c=eRAMFD45gAfqt84VtBcfhQ&r=BK7q3XeAvimeWdGbWY_wJYbW0WYiZvSXAJJKaaPhzWA&m=8prfnXvxKeaF5nBXFPkZu-YTgwJ3uhMTeUOk44L8DPU&s=nUfzBXboeDlTdiYJYbEd92E8GKN127Qtor_YYjQqzYE&e=
>
>> No methods found in package ?IRanges? for request: ?splitAsList? when loading ?ensembldb?
>> Error: object 'splitAsList' is not exported by 'namespace:IRanges'
>
> I never encountered this particular error during the review process so I am bit out of my depth.
>
> If I read this error correctly, it was triggered trying to load the ensembldb package (which is an indirect dependency). However, ensembldb did build correctly and splitAsList is as far as I know also exported from IRanges. IRanges also build correctly.
>
> Thanks for any advice or a pointer, how I can debug this?
>
> Best regards,
> Felix
>
> [[alternative HTML version deleted]]
>
>
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--
Herv? Pag?s
Program in Computational Biology
Division of Public Health Sciences
Fred Hutchinson Cancer Research Center
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