[Bioc-devel] Package update before october 23rd deadline and build errors [duplicated, wrong email address previous]
Hi Giulia, Today's report is available. Unfortunately ISAnalytics tests are still failing on Windows: https://bioconductor.org/checkResults/devel/bioc-LATEST/ISAnalytics/tokay1-checksrc.html Note that you have this warning at the beginning of the tests: > test_check("ISAnalytics") Warning message: In file(file, "rt") : file("") only supports open = "w+" and open = "w+b": using the former Maybe it's relevant? In any case, that warning should not be ignored as it is most likely reporting a real problem. Best, H.
On 10/21/20 02:58, Giulia Pais wrote:
Hello, bioconductor team, I'm one of the contributors for the package ISAnalytics. We pushed some changes we would like to be included in the release for bioconductor 3.12 a couple of days ago but the build report still refers to the older version, did we miss the deadline for updates or is it normal? Moreover, by taking a look at the build report for the older version we noticed it had failed on Windows, which is to us very odd, since we develop and check the package on windows locally and we also have github automated actions that perform the same checks on other machines and there were no errors or warnings. From what we can see from the report it seems a BiocParallel problem, could you give us feedback on this please? The link to the build report: https://urldefense.proofpoint.com/v2/url?u=http-3A__bioconductor.org_checkResults_devel_bioc-2DLATEST_ISAnalytics_&d=DwICAg&c=eRAMFD45gAfqt84VtBcfhQ&r=BK7q3XeAvimeWdGbWY_wJYbW0WYiZvSXAJJKaaPhzWA&m=CHJeB1qsdWS04WzhReQyXwYrMCo0ZFIzgm8KFXf0dSU&s=gGAt_tpoNlVhB63K8IusN9oxHe9SQzGi6T3Drsx4jxU&e= Thank you in advance, Giulia Pais
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Herv? Pag?s Program in Computational Biology Division of Public Health Sciences Fred Hutchinson Cancer Research Center 1100 Fairview Ave. N, M1-B514 P.O. Box 19024 Seattle, WA 98109-1024 E-mail: hpages at fredhutch.org Phone: (206) 667-5791 Fax: (206) 667-1319