Bioc-devel - October 2020 - Date View

Friday, October 30, 2020 7 emails

Shepherd, Lori Outdated Bioconductor's config.yaml Nuno Agostinho Outdated Bioconductor's config.yaml Kevin RUE News: Extended submission deadline for EuroBioc2020 Shepherd, Lori skipped, ERROR Kasper Daniel Hansen BiocManager and R-devel Martin Morgan BiocManager and R-devel Kasper Daniel Hansen BiocManager and R-devel

Thursday, October 29, 2020 4 emails

刘伟 skipped, ERROR Damian Szklarczyk Possible DNS issue? Hervé Pagès Possible DNS issue? Turaga, Nitesh Bioconductor Git Credentials

Wednesday, October 28, 2020 3 emails

Hervé Pagès Possible DNS issue? Estefania Mancini Bioconductor 3.12 is Released! Shepherd, Lori Bioconductor 3.12 is Released!

Tuesday, October 27, 2020 6 emails

Turaga, Nitesh Bioconductor version 3.12 branching today Turaga, Nitesh Bioconductor version 3.12 branching today Turaga, Nitesh Bioconductor version 3.12 branching today Shepherd, Lori NanoporeRNASeq not found in the devel Bioc3.12 package list Damian Szklarczyk Possible DNS issue? Giulia Pais Ris: Package update before october 23rd deadline and build errors [duplicated, wrong email address previous]

Monday, October 26, 2020 5 emails

CHEN Ying NanoporeRNASeq not found in the devel Bioc3.12 package list Hervé Pagès Package update before october 23rd deadline and build errors [duplicated, wrong email address previous] Turaga, Nitesh Bioconductor Git Credentials Shepherd, Lori Last day to make commit before the RELEASE_3_12 Kasper Daniel Hansen Package update before october 23rd deadline and build errors [duplicated, wrong email address previous]

Sunday, October 25, 2020 1 email

Giulia Pais Package update before october 23rd deadline and build errors [duplicated, wrong email address previous]

Saturday, October 24, 2020 4 emails

Mikhail Dozmorov Co-maintainer for SpectralTAD and TADCompare Martin Morgan nightly devel build Emilie nightly devel build Martin Morgan NanoporeRNASeq not found in the devel Bioc3.12 package list

Friday, October 23, 2020 3 emails

CHEN Ying NanoporeRNASeq not found in the devel Bioc3.12 package list Shepherd, Lori Bioc 3.12 Feature Freeze and Deadline for passing R CMD build/check Vincent Carey Regarding installation of bioconductor version 2.13

Thursday, October 22, 2020 7 emails

Anamika Thalor Regarding installation of bioconductor version 2.13 Shepherd, Lori SUPPORT SITE UPGRADE TODAY -- PLEASE REFRAIN FROM POSTING David Jimenez-Morales BioC 3.12 coming soon, package a4 and a4Base need your attention! Shepherd, Lori SUPPORT SITE UPGRADE TODAY -- PLEASE REFRAIN FROM POSTING Shepherd, Lori MOGAMUN not available in the devel's repository Elva NOVOA MOGAMUN not available in the devel's repository Martin Morgan BioC 3.12 coming soon, package a4 and a4Base need your attention!

Wednesday, October 21, 2020 24 emails

David Jimenez-Morales BioC 3.12 coming soon, package a4 and a4Base need your attention! Christian Mertes Can we still patch a broken package in 3_11 Jianhai Zhang Error: invalid character in attribute value [9] Giulia Pais Ris: Package update before october 23rd deadline and build errors [duplicated, wrong email address previous] Laurent Gatto merging DFrames Shepherd, Lori 3.12 builds Soroor Zadeh 3.12 builds Michael Lawrence merging DFrames Chris Eeles 3.12 builds Hervé Pagès Package update before october 23rd deadline and build errors [duplicated, wrong email address previous] Giulia Pais Package update before october 23rd deadline and build errors [duplicated, wrong email address previous] Hervé Pagès 3.12 builds Hervé Pagès merging DFrames Laurent Gatto merging DFrames Zhang, David Windows build warnings from basilisk configure file Nitesh Turaga Access denied to lpNet package Mike Smith Bioconductor Developers Forum - 22th October Shepherd, Lori Package update before october 23rd deadline and build errors [duplicated, wrong email address previous] Shepherd, Lori Can we still patch a broken package in 3_11 Britta Velten MOFA package deprecation Shepherd, Lori MOFA package deprecation Britta Velten MOFA package deprecation Giulia Pais Package update before october 23rd deadline and build errors [duplicated, wrong email address previous] Giulia Pais Package update before october 23rd deadline and build errors

Tuesday, October 20, 2020 6 emails

Christian Mertes Can we still patch a broken package in 3_11 Simo Kitanovski IgGeneUsage Bioconductor package Turaga, Nitesh IgGeneUsage Bioconductor package Turaga, Nitesh IgGeneUsage Bioconductor package Prof.Dr. Lars Kaderali Access denied to lpNet package Mike Smith R 4.0.3 for Windows R CMD check finds 'abort'

Monday, October 19, 2020 21 emails

Saturday, October 17, 2020 2 emails

Xiaowen Chen A question about r package update Martin Morgan A question about r package update

Friday, October 16, 2020 8 emails

Gordon K Smyth R 4.0.3 for Windows R CMD check finds 'abort' Xiaowen Chen A question about r package update Shepherd, Lori Package deprecation Choi Hyung Won Package deprecation Interdonato, Kayla Bioconductor 3.12 db0s, OrgDbs and TxDbs now available Shepherd, Lori A question about r package update Xiaowen Chen A question about r package update Turaga, Nitesh Access git@git.bioconductor.org:packages/Spectra.git

Thursday, October 15, 2020 4 emails

Nitesh Turaga Disabled email address - clustComp package ESTER AURORA TORRENTE ORIHUELA Disabled email address - clustComp package Shepherd, Lori Help for R package check Xiaowen Chen Help for R package check

Wednesday, October 14, 2020 12 emails

Mike Smith Time-out error on Ubuntu 20.04 build Nitesh Turaga Add Bioconductor Maintainer Questions Elana Fertig Add Bioconductor Maintainer Questions Nitesh Turaga Add Bioconductor Maintainer Questions Melanie Loth Add Bioconductor Maintainer Questions Melanie Loth Access to Vincent Carey Project-wide code of conduct for Bioconductor Laure Cougnaud BioC 3.12 coming soon, package a4 and a4Base need your attention! Martin Morgan BioC 3.12 coming soon, package a4 and a4Base need your attention! Stuart Lee multicrispr: builds fine on all test platforms except one (nebbiolo) Laure Cougnaud BioC 3.12 coming soon, package a4 and a4Base need your attention! Bhagwat, Aditya multicrispr: builds fine on all test platforms except one (nebbiolo)

Tuesday, October 13, 2020 8 emails

Hervé Pagès Time-out error on Ubuntu 20.04 build Selles Vidal, Lara Time-out error on Ubuntu 20.04 build Hervé Pagès Time-out error on Ubuntu 20.04 build Turaga, Nitesh Bioconductor Release Announcement: RELEASE_3_11 branch frozen Turaga, Nitesh Bioconductor Release Announcement: RELEASE_3_11 branch freeze Selles Vidal, Lara Time-out error on Ubuntu 20.04 build Shepherd, Lori Package sitePath check error is bound to an upper dependency package Shepherd, Lori Question for scheduled release

Monday, October 12, 2020 7 emails

Martin Morgan "there is no package called 'BSgenome.Athaliana.TAIR.TAIR9'" Martin Morgan Sorry confused about version numbers etc... Paul Brennan Sorry confused about version numbers etc... Paul Shannon "there is no package called 'BSgenome.Athaliana.TAIR.TAIR9'" Nitesh Turaga Lost access to my package "AffiXcan", and gained W permissions to empty repo "AffiXan" Martin Morgan How to handle namespace/import of Rcurl Kristoffer Vitting-Seerup How to handle namespace/import of Rcurl

Sunday, October 11, 2020 1 email

Alessandro Lussana Lost access to my package "AffiXcan", and gained W permissions to empty repo "AffiXan"

Saturday, October 10, 2020 1 email

Chengyang.Ji12 Package sitePath check error is bound to an upper dependency package

Friday, October 9, 2020 8 emails

Yang,Peng Question for scheduled release Lei Huang Remove Windows support for a package Lei Huang Reset BioCredentials Shepherd, Lori Package Code Freeze for Release Bioconductor 3.11 Tuesday October 13th! Turaga, Nitesh Reset BioCredentials Willem Ligtenberg EXTERNAL: Fwd: 'reactome.db' Bioconductor package Shepherd, Lori Remove Windows support for a package Interdonato, Kayla EXTERNAL: Fwd: 'reactome.db' Bioconductor package

Thursday, October 8, 2020 7 emails

Lei Huang Reset BioCredentials Lei Huang Remove Windows support for a package Marcel Ramos Unsure about why package is not updating Krutik Patel (PGR) Unsure about why package is not updating Willem Ligtenberg 'reactome.db' Bioconductor package Shepherd, Lori Single Package Builder for New Package Submission Shepherd, Lori Single Package Builder for New Package Submission

Wednesday, October 7, 2020 1 email

Nitesh Turaga BiocCredentials

Tuesday, October 6, 2020 7 emails

Selles Vidal, Lara SSL error on Ubuntu 20.04 Selles Vidal, Lara Time-out error on Ubuntu 20.04 build Shepherd, Lori Issue when fetching upstream Nitesh Turaga Issue when fetching upstream Nitesh Turaga Issue when fetching upstream Hélène Borges Issue when fetching upstream Katherine Icay BiocCredentials

Monday, October 5, 2020 1 email

Shepherd, Lori One week to RELEASE_3_11 freeze

Friday, October 2, 2020 2 emails

Shepherd, Lori ExperimentHub with AWS Shepherd, Lori Last Day to Submitted New Packages for Bioc 3.12

Thursday, October 1, 2020 15 emails

Spiro Stilianoudakis ExperimentHub with AWS McGrath, Max Git pack file greater than 5MB Martin Morgan Updating to Python 3: Problem with Importlib library Martin Morgan Git pack file greater than 5MB Yuxi Sun Updating to Python 3: Problem with Importlib library Henrik Bengtsson Git pack file greater than 5MB Nitesh Turaga Git pack file greater than 5MB Henrik Bengtsson Git pack file greater than 5MB Nitesh Turaga Git pack file greater than 5MB Nitesh Turaga Issue with connecting to 'git.bioconductor.org' during git fetch --all Emilie Secherre EXTERNAL: Publickey permission denied Interdonato, Kayla EXTERNAL: Publickey permission denied Krutik Patel (PGR) Issue with connecting to 'git.bioconductor.org' during git fetch --all Mike Smith SSL error on Ubuntu 20.04 Emilie Secherre Publickey permission denied

Bioc-devel October 2020