[Bioc-devel] ExperimentHub with AWS
Hello! Thank you for your interest in the hubs. We would agree that hosting on AWS would be better than a google drive. Firstly, there is an off-list hubs at bioconductor.org email to direct future hub inquires and questions too. I will send the credentials in a private email follow this one to allow you to upload your files to a temporary location on S3. Once the data is uploaded, we will move them to a permanent location. In order to add the data to the database, We need at least a basic shell of a package that includes a valid, complete DESCRIPTION file and inst/extdata/metadata.csv file. You will eventually need to submit this package to the submission tracker like you did for preciseTAD. Hopefully this gets you started. Please address further issues to hubs at bioconductor.org Cheers, Lori Shepherd Bioconductor Core Team Roswell Park Comprehensive Cancer Center Department of Biostatistics & Bioinformatics Elm & Carlton Streets Buffalo, New York 14263
From: Bioc-devel <bioc-devel-bounces at r-project.org> on behalf of Spiro Stilianoudakis <stilianoudasc at mymail.vcu.edu>
Sent: Thursday, October 1, 2020 3:46 PM
To: bioc-devel at r-project.org <bioc-devel at r-project.org>
Subject: [Bioc-devel] ExperimentHub with AWS
Sent: Thursday, October 1, 2020 3:46 PM
To: bioc-devel at r-project.org <bioc-devel at r-project.org>
Subject: [Bioc-devel] ExperimentHub with AWS
Hi all, I am maintaining a newly added package on Bioconductor (preciseTAD). I am interested in having an accompanying experiment data package where I will be storing approximately ~5gb worth of rds (or Rda) objects. They are currently being stored on a google drive but I would prefer them to be accessed via AWS. I have been reading the tutorial for how to accomplish this via experimenthub using https://secure-web.cisco.com/1TMpKSH4CQS1ndNXVk-cxZ5rvxuAK7Gef6Wx4ybNByrtkiLzN8dh-sqjwDyn1goqX02tT1qfBlnPzinaTLLifBLSCJnVtTAYjhAVERB838I5CgdTw4kpkb3jncHO8VCNgAp4NJYthAfGXJ_dZbI3kfd5rE4mUacC7l-vd_qa68l8BjKV9w9IcBjN0pAigi4KNefHIOOMNQnkbC7HVN23_vC6K_e3cDufvXEHnj7KiB7K_QQpeB2HZ7EhWrHgWowTJVR_HaWZ0jAcQdmoqKewbBQTTxCkFSVgxbotcdvXbdu1Yv-_6t-95dMERHWZ9lvRx/https%3A%2F%2Fbioconductor.org%2Fpackages%2Fdevel%2Fbioc%2Fvignettes%2FExperimentHub%2Finst%2Fdoc%2FCreateAnExperimentHubPackage.html%23overview Under section 2.1 of the above tutorial it mentions that this requires assistance from a Bioconductor team member. I am new to this, so I just want to make sure I am going about this correctly. I would greatly appreciate any input/advice from someone more experienced in the matter. Also, is it correct that I need to have the experiment package created before the data is added to the hub? Thank you ahead of time for any help you can provide! Best, Spiro Stilianoudakis PhD Candidate | Department of Biostatistics Virginia Commonwealth University [[alternative HTML version deleted]] _______________________________________________ Bioc-devel at r-project.org mailing list https://secure-web.cisco.com/1793KboGOriG8NL0RMrOCMaNHKY2cc--hLZ4PnikE7S2hkXR0bZontqpxc6oZJrxkDrEvatgx91XucQRc87e9odQPg1pm1mI5-Q1fmo6MEVUhfhIBhxuFdyE43oC8rS7O2DKuFcQj10LknZzIlftSwFT1kCZJ40nP-k360jJWTpBK1O1L_-FVYjPRPYOqlIzXVB5I4X7IPX8_-S4hkHl_Y7Jar_pttGUAnEEgPhcx6ZwltptfhxnX8aeO-HVBgbmj73gmLFzkR06F7I7NDZECCqeoZE6WCRdN6ph_V0YZb2JZk-3GuToIkcyV2l7cgfZN/https%3A%2F%2Fstat.ethz.ch%2Fmailman%2Flistinfo%2Fbioc-devel This email message may contain legally privileged and/or confidential information. If you are not the intended recipient(s), or the employee or agent responsible for the delivery of this message to the intended recipient(s), you are hereby notified that any disclosure, copying, distribution, or use of this email message is prohibited. If you have received this message in error, please notify the sender immediately by e-mail and delete this email message from your computer. Thank you.