[Bioc-devel] github bridge to bioconductor

On Jan 2, 2019, at 12:45 PM, Karl Stamm <karl.stamm at gmail.com> wrote:

Wow that was easy. Thanks Nitesh.

 git push upstream master
Counting objects: 20, done.
Delta compression using up to 4 threads.
Compressing objects: 100% (20/20), done.
Writing objects: 100% (20/20), 5.33 KiB | 1.33 MiB/s, done.
Total 20 (delta 14), reused 0 (delta 0)
To git.bioconductor.org:packages/rgsepd
   4715839..b7aad7a  master -> master

 I didn't find that command in the half-dozen different bioconductor developers tutorials, and 'git push' just kept telling me everything was up to date. I started this package a few years ago when Bioc used SVN, and have been confused ever since they moved to git and recommended I make a github account. 
Looking forward to seeing tonight's build report. 


On Wed, Jan 2, 2019 at 9:55 AM Turaga, Nitesh <Nitesh.Turaga at roswellpark.org> wrote:
There is no bridge between GitHub and Bioconductor?s private git server. 

You have to push separately to the Bioconductor?s git server. Based on your setup, you have to do,

        git push upstream master 

which, pushes to git at git.bioconductor.org:packages/rgsepd.

Please let me know if you have done this. 

Once you have done this, check https://bioconductor.org/developers/gitlog/ to see if you commit is available on that list.

Best,

Nitesh 

On Jan 2, 2019, at 10:49 AM, Karl Stamm <karl.stamm at gmail.com> wrote:

I think there's a disconnect between the github and the bioconductor build
server. I cannot seem to get any updates to go into the Bioc devel
packages.
I have added a few things to v1.15.x and the Bioc website still lists me as
1.15.0.
I have the workstation set up as such

git remote -v

origin git at github.com:kstammits/rgsepd.git (fetch)

origin git at github.com:kstammits/rgsepd.git (push)

upstream git at git.bioconductor.org:packages/rgsepd (fetch)

upstream git at git.bioconductor.org:packages/rgsepd (push)

and it claims 'everything is up to date' when I try to push. Github shows
my changes, but they arent going into Bioc.  How can I get the two
connected?

Thanks.

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