Hello, The package banocc has a build error - I was given the task to fix it and update the "Maintainer" information to include me and the head of our Lab, Prof. Curtis Huttenhower. The package was developed originally by Emma Schwager who has left our Lab. I cloned the package, made the necessary changes, ran a successful BUILD , CHECK, BiocCheck and committed the changes and am ready to push the changes, but I am getting a "permission denied" message - and indeed, I see in my profile I can update only ccrepe. I need update access against 'banocc" Thanks! George Weingart PhD Huttenhower Lab Harvard School of Public Health
[Bioc-devel] Need update access agaisnt package 'banocc'
11 messages · Obenchain, Valerie, Turaga, Nitesh, George Weingart +2 more
Hi George, Thanks for letting us know - you should now have access. Valerie
On 10/17/18 10:50 AM, George Weingart wrote:
Hello, The package banocc has a build error - I was given the task to fix it and update the "Maintainer" information to include me and the head of our Lab, Prof. Curtis Huttenhower. The package was developed originally by Emma Schwager who has left our Lab. I cloned the package, made the necessary changes, ran a successful BUILD , CHECK, BiocCheck and committed the changes and am ready to push the changes, but I am getting a "permission denied" message - and indeed, I see in my profile I can update only ccrepe. I need update access against 'banocc" Thanks! George Weingart PhD Huttenhower Lab Harvard School of Public Health _______________________________________________ Bioc-devel at r-project.org<mailto:Bioc-devel at r-project.org> mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel This email message may contain legally privileged and/or confidential information. If you are not the intended recipient(s), or the employee or agent responsible for the delivery of this message to the intended recipient(s), you are hereby notified that any disclosure, copying, distribution, or use of this email message is prohibited. If you have received this message in error, please notify the sender immediately by e-mail and delete this email message from your computer. Thank you.
Hi, This is a follow up to Valerie?s response in regards to the permission to update ?banocc? I am still getting an error message when I am trying to push: Tanias-MacBook-Air:banocc georgeweingart$ git push origin master fatal: remote error: FATAL: W any packages/banocc nobody DENIED by fallthru (or you mis-spelled the reponame) Am I doing something wrong or am I still not permitted to update the repository ? Thanks! George Weingart PhD Huttenhower Lab Harvard School of Public Health DETAILS List of remotes Tanias-MacBook-Air:banocc georgeweingart$ git remote -v origin https://git.bioconductor.org/packages/banocc (fetch) origin https://git.bioconductor.org/packages/banocc (push) Log of the commits Tanias-MacBook-Air:banocc georgeweingart$ git log --oneline 9c411f9 (HEAD -> master) Modified DESCRIPTION to update contacts and added parms to enable correct compile using C++11 756f013 (origin/master, origin/HEAD) replace BiocInstaller biocLite mentions with BiocManager ef9422a bump x.y.z versions to odd y after creation of RELEASE_3_7 branch d937c6d (origin/RELEASE_3_7) bump x.y.z versions to even y prior to creation of RELEASE_3_7 branch 5cdd6e0 revert commit 63d51b83b60d6656930e0436a42cd606e5ef23b9 63d51b8 mark as unsupported on 32-bit windows; the builders only have 64-bit pandoc 7b7f415 bump x.y.z versions to odd y after creation of RELEASE_3_6 branch 40bc005 (origin/RELEASE_3_6) bump x.y.z versions to even y prior to creation of RELEASE_3_6 branch b471035 bump x.y.z versions to odd y after creation of 3_5 branch e296cfc bump x.y.z versions to even y prior to creation of 3_5 branch 927028f Adding AnnotationFilter, NADfinder, GenomicDataCommons, RIVER, BioMedR, banocc Beginning of the extended log of the commits Tanias-MacBook-Air:banocc georgeweingart$ git log commit 9c411f9d62abf39cfc1a32cd888a412577463b5c (HEAD -> master) Author: George Weingart <george.weingart at gmail.com> Date: Wed Oct 17 18:42:24 2018 -0700 Modified DESCRIPTION to update contacts and added parms to enable correct compile using C++11 commit 756f0130599144e9ec90e61e84f90a9cec307a94 (origin/master, origin/HEAD) Author: LiNk-NY <mramos09 at gmail.com> Date: Tue Aug 28 18:51:28 2018 -0400 replace BiocInstaller biocLite mentions with BiocManager commit ef9422abd0d4e323268c9d807e0a094c9dd07dd6 Author: vobencha <valerie.obenchain at roswellpark.org> Date: Mon Apr 30 10:41:43 2018 -0400 bump x.y.z versions to odd y after creation of RELEASE_3_7 branch commit d937c6d2f55d92fd3fbcfa1226c65c260cd47387 (origin/RELEASE_3_7) Author: vobencha <valerie.obenchain at roswellpark.org> Date: Mon Apr 30 10:35:46 2018 -0400 bump x.y.z versions to even y prior to creation of RELEASE_3_7 branch On Wed, Oct 17, 2018 at 12:21 PM Obenchain, Valerie <
Valerie.Obenchain at roswellpark.org> wrote:
Hi George, Thanks for letting us know - you should now have access. Valerie On 10/17/18 10:50 AM, George Weingart wrote: Hello, The package banocc has a build error - I was given the task to fix it and update the "Maintainer" information to include me and the head of our Lab, Prof. Curtis Huttenhower. The package was developed originally by Emma Schwager who has left our Lab. I cloned the package, made the necessary changes, ran a successful BUILD , CHECK, BiocCheck and committed the changes and am ready to push the changes, but I am getting a "permission denied" message - and indeed, I see in my profile I can update only ccrepe. I need update access against 'banocc" Thanks! George Weingart PhD Huttenhower Lab Harvard School of Public Health [[alternative HTML version deleted]]
_______________________________________________Bioc-devel at r-project.org mailing listhttps://stat.ethz.ch/mailman/listinfo/bioc-devel This email message may contain legally privileged and/or confidential information. If you are not the intended recipient(s), or the employee or agent responsible for the delivery of this message to the intended recipient(s), you are hereby notified that any disclosure, copying, distribution, or use of this email message is prohibited. If you have received this message in error, please notify the sender immediately by e-mail and delete this email message from your computer. Thank you.
Your remotes should look like this, origin git at git.bioconductor.org/packages/myPackage.git (fetch) origin git at git.bioconductor.org/packages/myPackage.git (push) Access is through SSH protocol, not HTTPS. ? SSH (developer) read / write access: git at git.bioconductor.org ? HTTPS (public) read only access: https://git.bioconductor.org Please check http://bioconductor.org/developers/how-to/git/. Also, http://bioconductor.org/developers/how-to/git/faq/ (#13). Best, Nitesh
On Oct 17, 2018, at 9:57 PM, George Weingart <george.weingart at gmail.com> wrote: Hi, This is a follow up to Valerie?s response in regards to the permission to update ?banocc? I am still getting an error message when I am trying to push: Tanias-MacBook-Air:banocc georgeweingart$ git push origin master fatal: remote error: FATAL: W any packages/banocc nobody DENIED by fallthru (or you mis-spelled the reponame) Am I doing something wrong or am I still not permitted to update the repository ? Thanks! George Weingart PhD Huttenhower Lab Harvard School of Public Health DETAILS List of remotes Tanias-MacBook-Air:banocc georgeweingart$ git remote -v origin https://git.bioconductor.org/packages/banocc (fetch) origin https://git.bioconductor.org/packages/banocc (push) Log of the commits Tanias-MacBook-Air:banocc georgeweingart$ git log --oneline 9c411f9 (HEAD -> master) Modified DESCRIPTION to update contacts and added parms to enable correct compile using C++11 756f013 (origin/master, origin/HEAD) replace BiocInstaller biocLite mentions with BiocManager ef9422a bump x.y.z versions to odd y after creation of RELEASE_3_7 branch d937c6d (origin/RELEASE_3_7) bump x.y.z versions to even y prior to creation of RELEASE_3_7 branch 5cdd6e0 revert commit 63d51b83b60d6656930e0436a42cd606e5ef23b9 63d51b8 mark as unsupported on 32-bit windows; the builders only have 64-bit pandoc 7b7f415 bump x.y.z versions to odd y after creation of RELEASE_3_6 branch 40bc005 (origin/RELEASE_3_6) bump x.y.z versions to even y prior to creation of RELEASE_3_6 branch b471035 bump x.y.z versions to odd y after creation of 3_5 branch e296cfc bump x.y.z versions to even y prior to creation of 3_5 branch 927028f Adding AnnotationFilter, NADfinder, GenomicDataCommons, RIVER, BioMedR, banocc Beginning of the extended log of the commits Tanias-MacBook-Air:banocc georgeweingart$ git log commit 9c411f9d62abf39cfc1a32cd888a412577463b5c (HEAD -> master) Author: George Weingart <george.weingart at gmail.com> Date: Wed Oct 17 18:42:24 2018 -0700 Modified DESCRIPTION to update contacts and added parms to enable correct compile using C++11 commit 756f0130599144e9ec90e61e84f90a9cec307a94 (origin/master, origin/HEAD) Author: LiNk-NY <mramos09 at gmail.com> Date: Tue Aug 28 18:51:28 2018 -0400 replace BiocInstaller biocLite mentions with BiocManager commit ef9422abd0d4e323268c9d807e0a094c9dd07dd6 Author: vobencha <valerie.obenchain at roswellpark.org> Date: Mon Apr 30 10:41:43 2018 -0400 bump x.y.z versions to odd y after creation of RELEASE_3_7 branch commit d937c6d2f55d92fd3fbcfa1226c65c260cd47387 (origin/RELEASE_3_7) Author: vobencha <valerie.obenchain at roswellpark.org> Date: Mon Apr 30 10:35:46 2018 -0400 bump x.y.z versions to even y prior to creation of RELEASE_3_7 branch On Wed, Oct 17, 2018 at 12:21 PM Obenchain, Valerie < Valerie.Obenchain at roswellpark.org> wrote:
Hi George, Thanks for letting us know - you should now have access. Valerie On 10/17/18 10:50 AM, George Weingart wrote: Hello, The package banocc has a build error - I was given the task to fix it and update the "Maintainer" information to include me and the head of our Lab, Prof. Curtis Huttenhower. The package was developed originally by Emma Schwager who has left our Lab. I cloned the package, made the necessary changes, ran a successful BUILD , CHECK, BiocCheck and committed the changes and am ready to push the changes, but I am getting a "permission denied" message - and indeed, I see in my profile I can update only ccrepe. I need update access against 'banocc" Thanks! George Weingart PhD Huttenhower Lab Harvard School of Public Health [[alternative HTML version deleted]]
_______________________________________________Bioc-devel at r-project.org mailing listhttps://stat.ethz.ch/mailman/listinfo/bioc-devel This email message may contain legally privileged and/or confidential information. If you are not the intended recipient(s), or the employee or agent responsible for the delivery of this message to the intended recipient(s), you are hereby notified that any disclosure, copying, distribution, or use of this email message is prohibited. If you have received this message in error, please notify the sender immediately by e-mail and delete this email message from your computer. Thank you.
[[alternative HTML version deleted]]
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This email message may contain legally privileged and/or confidential information. If you are not the intended recipient(s), or the employee or agent responsible for the delivery of this message to the intended recipient(s), you are hereby notified that any disclosure, copying, distribution, or use of this email message is prohibited. If you have received this message in error, please notify the sender immediately by e-mail and delete this email message from your computer. Thank you.
origin git at git.bioconductor.org:packages/myPackage.git (fetch) origin git at git.bioconductor.org:packages/myPackage.git (push)
Typo in there, its ?..org:packages/.."
On Oct 17, 2018, at 10:47 PM, Turaga, Nitesh <Nitesh.Turaga at RoswellPark.org> wrote: Your remotes should look like this, origin git at git.bioconductor.org/packages/myPackage.git (fetch) origin git at git.bioconductor.org/packages/myPackage.git (push) Access is through SSH protocol, not HTTPS. ? SSH (developer) read / write access: git at git.bioconductor.org ? HTTPS (public) read only access: https://git.bioconductor.org Please check http://bioconductor.org/developers/how-to/git/. Also, http://bioconductor.org/developers/how-to/git/faq/ (#13). Best, Nitesh
On Oct 17, 2018, at 9:57 PM, George Weingart <george.weingart at gmail.com> wrote: Hi, This is a follow up to Valerie?s response in regards to the permission to update ?banocc? I am still getting an error message when I am trying to push: Tanias-MacBook-Air:banocc georgeweingart$ git push origin master fatal: remote error: FATAL: W any packages/banocc nobody DENIED by fallthru (or you mis-spelled the reponame) Am I doing something wrong or am I still not permitted to update the repository ? Thanks! George Weingart PhD Huttenhower Lab Harvard School of Public Health DETAILS List of remotes Tanias-MacBook-Air:banocc georgeweingart$ git remote -v origin https://git.bioconductor.org/packages/banocc (fetch) origin https://git.bioconductor.org/packages/banocc (push) Log of the commits Tanias-MacBook-Air:banocc georgeweingart$ git log --oneline 9c411f9 (HEAD -> master) Modified DESCRIPTION to update contacts and added parms to enable correct compile using C++11 756f013 (origin/master, origin/HEAD) replace BiocInstaller biocLite mentions with BiocManager ef9422a bump x.y.z versions to odd y after creation of RELEASE_3_7 branch d937c6d (origin/RELEASE_3_7) bump x.y.z versions to even y prior to creation of RELEASE_3_7 branch 5cdd6e0 revert commit 63d51b83b60d6656930e0436a42cd606e5ef23b9 63d51b8 mark as unsupported on 32-bit windows; the builders only have 64-bit pandoc 7b7f415 bump x.y.z versions to odd y after creation of RELEASE_3_6 branch 40bc005 (origin/RELEASE_3_6) bump x.y.z versions to even y prior to creation of RELEASE_3_6 branch b471035 bump x.y.z versions to odd y after creation of 3_5 branch e296cfc bump x.y.z versions to even y prior to creation of 3_5 branch 927028f Adding AnnotationFilter, NADfinder, GenomicDataCommons, RIVER, BioMedR, banocc Beginning of the extended log of the commits Tanias-MacBook-Air:banocc georgeweingart$ git log commit 9c411f9d62abf39cfc1a32cd888a412577463b5c (HEAD -> master) Author: George Weingart <george.weingart at gmail.com> Date: Wed Oct 17 18:42:24 2018 -0700 Modified DESCRIPTION to update contacts and added parms to enable correct compile using C++11 commit 756f0130599144e9ec90e61e84f90a9cec307a94 (origin/master, origin/HEAD) Author: LiNk-NY <mramos09 at gmail.com> Date: Tue Aug 28 18:51:28 2018 -0400 replace BiocInstaller biocLite mentions with BiocManager commit ef9422abd0d4e323268c9d807e0a094c9dd07dd6 Author: vobencha <valerie.obenchain at roswellpark.org> Date: Mon Apr 30 10:41:43 2018 -0400 bump x.y.z versions to odd y after creation of RELEASE_3_7 branch commit d937c6d2f55d92fd3fbcfa1226c65c260cd47387 (origin/RELEASE_3_7) Author: vobencha <valerie.obenchain at roswellpark.org> Date: Mon Apr 30 10:35:46 2018 -0400 bump x.y.z versions to even y prior to creation of RELEASE_3_7 branch On Wed, Oct 17, 2018 at 12:21 PM Obenchain, Valerie < Valerie.Obenchain at roswellpark.org> wrote:
Hi George, Thanks for letting us know - you should now have access. Valerie On 10/17/18 10:50 AM, George Weingart wrote: Hello, The package banocc has a build error - I was given the task to fix it and update the "Maintainer" information to include me and the head of our Lab, Prof. Curtis Huttenhower. The package was developed originally by Emma Schwager who has left our Lab. I cloned the package, made the necessary changes, ran a successful BUILD , CHECK, BiocCheck and committed the changes and am ready to push the changes, but I am getting a "permission denied" message - and indeed, I see in my profile I can update only ccrepe. I need update access against 'banocc" Thanks! George Weingart PhD Huttenhower Lab Harvard School of Public Health [[alternative HTML version deleted]]
_______________________________________________Bioc-devel at r-project.org mailing listhttps://stat.ethz.ch/mailman/listinfo/bioc-devel This email message may contain legally privileged and/or confidential information. If you are not the intended recipient(s), or the employee or agent responsible for the delivery of this message to the intended recipient(s), you are hereby notified that any disclosure, copying, distribution, or use of this email message is prohibited. If you have received this message in error, please notify the sender immediately by e-mail and delete this email message from your computer. Thank you.
[[alternative HTML version deleted]]
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This email message may contain legally privileged and/or confidential information. If you are not the intended recipient(s), or the employee or agent responsible for the delivery of this message to the intended recipient(s), you are hereby notified that any disclosure, copying, distribution, or use of this email message is prohibited. If you have received this message in error, please notify the sender immediately by e-mail and delete this email message from your computer. Thank you.
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Hello, Seems I have been able to push successfully but I do not see the build report - Did I do something wrong or am I alooking at the wrong place? See enclosed screen print Thanks for your help ! Tanias-MacBook-Air:banocc georgeweingart$ git push origin master Counting objects: 8, done. Delta compression using up to 4 threads. Compressing objects: 100% (8/8), done. Writing objects: 100% (8/8), 1.02 KiB | 1.02 MiB/s, done. Total 8 (delta 6), reused 0 (delta 0) To git.bioconductor.org:packages/banocc 756f013..9aee576 master -> master On Thu, Oct 18, 2018 at 5:16 AM Turaga, Nitesh <
Nitesh.Turaga at roswellpark.org> wrote:
origin git at git.bioconductor.org:packages/myPackage.git (fetch) origin git at git.bioconductor.org:packages/myPackage.git (push)
Typo in there, its ?..org:packages/.."
On Oct 17, 2018, at 10:47 PM, Turaga, Nitesh
<Nitesh.Turaga at RoswellPark.org> wrote:
Your remotes should look like this,
origin git at git.bioconductor.org/packages/myPackage.git (fetch)
origin git at git.bioconductor.org/packages/myPackage.git (push)
Access is through SSH protocol, not HTTPS.
? SSH (developer) read / write access: git at git.bioconductor.org
? HTTPS (public) read only access: https://git.bioconductor.org
Please check http://bioconductor.org/developers/how-to/git/.
Also, http://bioconductor.org/developers/how-to/git/faq/ (#13).
Best,
Nitesh
On Oct 17, 2018, at 9:57 PM, George Weingart <george.weingart at gmail.com>
wrote:
Hi, This is a follow up to Valerie?s response in regards to the permission
to
update ?banocc? I am still getting an error message when I am trying to push: Tanias-MacBook-Air:banocc georgeweingart$ git push origin master fatal: remote error: FATAL: W any packages/banocc nobody DENIED by
fallthru
(or you mis-spelled the reponame) Am I doing something wrong or am I still not permitted to update the repository ? Thanks! George Weingart PhD Huttenhower Lab Harvard School of Public Health DETAILS List of remotes Tanias-MacBook-Air:banocc georgeweingart$ git remote -v origin https://git.bioconductor.org/packages/banocc (fetch) origin https://git.bioconductor.org/packages/banocc (push) Log of the commits Tanias-MacBook-Air:banocc georgeweingart$ git log --oneline 9c411f9 (HEAD -> master) Modified DESCRIPTION to update contacts and
added
parms to enable correct compile using C++11 756f013 (origin/master, origin/HEAD) replace BiocInstaller biocLite mentions with BiocManager ef9422a bump x.y.z versions to odd y after creation of RELEASE_3_7
branch
d937c6d (origin/RELEASE_3_7) bump x.y.z versions to even y prior to creation of RELEASE_3_7 branch 5cdd6e0 revert commit 63d51b83b60d6656930e0436a42cd606e5ef23b9 63d51b8 mark as unsupported on 32-bit windows; the builders only have 64-bit pandoc 7b7f415 bump x.y.z versions to odd y after creation of RELEASE_3_6
branch
40bc005 (origin/RELEASE_3_6) bump x.y.z versions to even y prior to creation of RELEASE_3_6 branch b471035 bump x.y.z versions to odd y after creation of 3_5 branch e296cfc bump x.y.z versions to even y prior to creation of 3_5 branch 927028f Adding AnnotationFilter, NADfinder, GenomicDataCommons, RIVER, BioMedR, banocc Beginning of the extended log of the commits Tanias-MacBook-Air:banocc georgeweingart$ git log commit 9c411f9d62abf39cfc1a32cd888a412577463b5c (HEAD -> master) Author: George Weingart <george.weingart at gmail.com> Date: Wed Oct 17 18:42:24 2018 -0700 Modified DESCRIPTION to update contacts and added parms to enable correct compile using C++11 commit 756f0130599144e9ec90e61e84f90a9cec307a94 (origin/master,
origin/HEAD)
Author: LiNk-NY <mramos09 at gmail.com> Date: Tue Aug 28 18:51:28 2018 -0400 replace BiocInstaller biocLite mentions with BiocManager commit ef9422abd0d4e323268c9d807e0a094c9dd07dd6 Author: vobencha <valerie.obenchain at roswellpark.org> Date: Mon Apr 30 10:41:43 2018 -0400 bump x.y.z versions to odd y after creation of RELEASE_3_7 branch commit d937c6d2f55d92fd3fbcfa1226c65c260cd47387 (origin/RELEASE_3_7) Author: vobencha <valerie.obenchain at roswellpark.org> Date: Mon Apr 30 10:35:46 2018 -0400 bump x.y.z versions to even y prior to creation of RELEASE_3_7 branch On Wed, Oct 17, 2018 at 12:21 PM Obenchain, Valerie < Valerie.Obenchain at roswellpark.org> wrote:
Hi George, Thanks for letting us know - you should now have access. Valerie On 10/17/18 10:50 AM, George Weingart wrote: Hello, The package banocc has a build error - I was given the task to fix it
and
update the "Maintainer" information to include me and the head of our
Lab,
Prof. Curtis Huttenhower. The package was developed originally by Emma Schwager who has left our
Lab.
I cloned the package, made the necessary changes, ran a successful
BUILD ,
CHECK, BiocCheck and committed the changes and am ready to push the changes, but I am getting a "permission denied" message - and indeed,
I
see in my profile I can update only ccrepe.
I need update access against 'banocc"
Thanks!
George Weingart PhD
Huttenhower Lab
Harvard School of Public Health
[[alternative HTML version deleted]]
_______________________________________________
Bioc-devel at r-project.org mailing listhttps:// stat.ethz.ch/mailman/listinfo/bioc-devel
This email message may contain legally privileged and/or confidential information. If you are not the intended recipient(s), or the employee
or
agent responsible for the delivery of this message to the intended recipient(s), you are hereby notified that any disclosure, copying, distribution, or use of this email message is prohibited. If you have received this message in error, please notify the sender immediately by e-mail and delete this email message from your computer. Thank you.
[[alternative HTML version deleted]]
_______________________________________________ Bioc-devel at r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
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After a push is made it can take up to 48 hours for it to appear on the build report and landing pages - i.e. we do one pull, build, check, propagate in 24 hours - so if your commit was after the pull for the day it wont be until the following day
On Oct 18, 2018, at 10:03 AM, George Weingart <george.weingart at gmail.com> wrote: Hello, Seems I have been able to push successfully but I do not see the build report - Did I do something wrong or am I alooking at the wrong place? See enclosed screen print Thanks for your help ! Tanias-MacBook-Air:banocc georgeweingart$ git push origin master Counting objects: 8, done. Delta compression using up to 4 threads. Compressing objects: 100% (8/8), done. Writing objects: 100% (8/8), 1.02 KiB | 1.02 MiB/s, done. Total 8 (delta 6), reused 0 (delta 0) To git.bioconductor.org:packages/banocc 756f013..9aee576 master -> master On Thu, Oct 18, 2018 at 5:16 AM Turaga, Nitesh <Nitesh.Turaga at roswellpark.org> wrote:
origin git at git.bioconductor.org:packages/myPackage.git (fetch) origin git at git.bioconductor.org:packages/myPackage.git (push)
Typo in there, its ?..org:packages/.."
On Oct 17, 2018, at 10:47 PM, Turaga, Nitesh <Nitesh.Turaga at RoswellPark.org> wrote:
Your remotes should look like this,
origin git at git.bioconductor.org/packages/myPackage.git (fetch)
origin git at git.bioconductor.org/packages/myPackage.git (push)
Access is through SSH protocol, not HTTPS.
? SSH (developer) read / write access: git at git.bioconductor.org
? HTTPS (public) read only access: https://git.bioconductor.org
Please check http://bioconductor.org/developers/how-to/git/.
Also, http://bioconductor.org/developers/how-to/git/faq/ (#13).
Best,
Nitesh
On Oct 17, 2018, at 9:57 PM, George Weingart <george.weingart at gmail.com> wrote: Hi, This is a follow up to Valerie?s response in regards to the permission to update ?banocc? I am still getting an error message when I am trying to push: Tanias-MacBook-Air:banocc georgeweingart$ git push origin master fatal: remote error: FATAL: W any packages/banocc nobody DENIED by fallthru (or you mis-spelled the reponame) Am I doing something wrong or am I still not permitted to update the repository ? Thanks! George Weingart PhD Huttenhower Lab Harvard School of Public Health DETAILS List of remotes Tanias-MacBook-Air:banocc georgeweingart$ git remote -v origin https://git.bioconductor.org/packages/banocc (fetch) origin https://git.bioconductor.org/packages/banocc (push) Log of the commits Tanias-MacBook-Air:banocc georgeweingart$ git log --oneline 9c411f9 (HEAD -> master) Modified DESCRIPTION to update contacts and added parms to enable correct compile using C++11 756f013 (origin/master, origin/HEAD) replace BiocInstaller biocLite mentions with BiocManager ef9422a bump x.y.z versions to odd y after creation of RELEASE_3_7 branch d937c6d (origin/RELEASE_3_7) bump x.y.z versions to even y prior to creation of RELEASE_3_7 branch 5cdd6e0 revert commit 63d51b83b60d6656930e0436a42cd606e5ef23b9 63d51b8 mark as unsupported on 32-bit windows; the builders only have 64-bit pandoc 7b7f415 bump x.y.z versions to odd y after creation of RELEASE_3_6 branch 40bc005 (origin/RELEASE_3_6) bump x.y.z versions to even y prior to creation of RELEASE_3_6 branch b471035 bump x.y.z versions to odd y after creation of 3_5 branch e296cfc bump x.y.z versions to even y prior to creation of 3_5 branch 927028f Adding AnnotationFilter, NADfinder, GenomicDataCommons, RIVER, BioMedR, banocc Beginning of the extended log of the commits Tanias-MacBook-Air:banocc georgeweingart$ git log commit 9c411f9d62abf39cfc1a32cd888a412577463b5c (HEAD -> master) Author: George Weingart <george.weingart at gmail.com> Date: Wed Oct 17 18:42:24 2018 -0700 Modified DESCRIPTION to update contacts and added parms to enable correct compile using C++11 commit 756f0130599144e9ec90e61e84f90a9cec307a94 (origin/master, origin/HEAD) Author: LiNk-NY <mramos09 at gmail.com> Date: Tue Aug 28 18:51:28 2018 -0400 replace BiocInstaller biocLite mentions with BiocManager commit ef9422abd0d4e323268c9d807e0a094c9dd07dd6 Author: vobencha <valerie.obenchain at roswellpark.org> Date: Mon Apr 30 10:41:43 2018 -0400 bump x.y.z versions to odd y after creation of RELEASE_3_7 branch commit d937c6d2f55d92fd3fbcfa1226c65c260cd47387 (origin/RELEASE_3_7) Author: vobencha <valerie.obenchain at roswellpark.org> Date: Mon Apr 30 10:35:46 2018 -0400 bump x.y.z versions to even y prior to creation of RELEASE_3_7 branch On Wed, Oct 17, 2018 at 12:21 PM Obenchain, Valerie < Valerie.Obenchain at roswellpark.org> wrote:
Hi George,
Thanks for letting us know - you should now have access.
Valerie
On 10/17/18 10:50 AM, George Weingart wrote:
Hello,
The package banocc has a build error - I was given the task to fix it and
update the "Maintainer" information to include me and the head of our Lab,
Prof. Curtis Huttenhower.
The package was developed originally by Emma Schwager who has left our Lab.
I cloned the package, made the necessary changes, ran a successful BUILD ,
CHECK, BiocCheck and committed the changes and am ready to push the
changes, but I am getting a "permission denied" message - and indeed, I
see in my profile I can update only ccrepe.
I need update access against 'banocc"
Thanks!
George Weingart PhD
Huttenhower Lab
Harvard School of Public Health
[[alternative HTML version deleted]]
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This email message may contain legally privileged and/or confidential information. If you are not the intended recipient(s), or the employee or agent responsible for the delivery of this message to the intended recipient(s), you are hereby notified that any disclosure, copying, distribution, or use of this email message is prohibited. If you have received this message in error, please notify the sender immediately by e-mail and delete this email message from your computer. Thank you.
1 day later
Could I trouble you to look at banocc 1.5.2 that I pushed: it has a warning- Is that ok or can we leave it like that to be released? On Thu, Oct 18, 2018 at 7:21 AM Turaga, Nitesh <
Nitesh.Turaga at roswellpark.org> wrote:
After a push is made it can take up to 48 hours for it to appear on the build report and landing pages - i.e. we do one pull, build, check, propagate in 24 hours - so if your commit was after the pull for the day it wont be until the following day
On Oct 18, 2018, at 10:03 AM, George Weingart <george.weingart at gmail.com>
wrote:
Hello, Seems I have been able to push successfully but I do not see the build
report - Did I do something wrong or am I alooking at the wrong place?
See enclosed screen print Thanks for your help ! Tanias-MacBook-Air:banocc georgeweingart$ git push origin master Counting objects: 8, done. Delta compression using up to 4 threads. Compressing objects: 100% (8/8), done. Writing objects: 100% (8/8), 1.02 KiB | 1.02 MiB/s, done. Total 8 (delta 6), reused 0 (delta 0) To git.bioconductor.org:packages/banocc 756f013..9aee576 master -> master On Thu, Oct 18, 2018 at 5:16 AM Turaga, Nitesh <
Nitesh.Turaga at roswellpark.org> wrote:
origin git at git.bioconductor.org:packages/myPackage.git (fetch) origin git at git.bioconductor.org:packages/myPackage.git (push)
Typo in there, its ?..org:packages/.."
On Oct 17, 2018, at 10:47 PM, Turaga, Nitesh
<Nitesh.Turaga at RoswellPark.org> wrote:
Your remotes should look like this,
origin git at git.bioconductor.org/packages/myPackage.git (fetch)
origin git at git.bioconductor.org/packages/myPackage.git (push)
Access is through SSH protocol, not HTTPS.
? SSH (developer) read / write access: git at git.bioconductor.org
? HTTPS (public) read only access: https://git.bioconductor.org
Please check http://bioconductor.org/developers/how-to/git/.
Also, http://bioconductor.org/developers/how-to/git/faq/ (#13).
Best,
Nitesh
On Oct 17, 2018, at 9:57 PM, George Weingart <
george.weingart at gmail.com> wrote:
Hi, This is a follow up to Valerie?s response in regards to the
permission to
update ?banocc? I am still getting an error message when I am trying to push: Tanias-MacBook-Air:banocc georgeweingart$ git push origin master fatal: remote error: FATAL: W any packages/banocc nobody DENIED by
fallthru
(or you mis-spelled the reponame) Am I doing something wrong or am I still not permitted to update the repository ? Thanks! George Weingart PhD Huttenhower Lab Harvard School of Public Health DETAILS List of remotes Tanias-MacBook-Air:banocc georgeweingart$ git remote -v origin https://git.bioconductor.org/packages/banocc (fetch) origin https://git.bioconductor.org/packages/banocc (push) Log of the commits Tanias-MacBook-Air:banocc georgeweingart$ git log --oneline 9c411f9 (HEAD -> master) Modified DESCRIPTION to update contacts and
added
parms to enable correct compile using C++11 756f013 (origin/master, origin/HEAD) replace BiocInstaller biocLite mentions with BiocManager ef9422a bump x.y.z versions to odd y after creation of RELEASE_3_7
branch
d937c6d (origin/RELEASE_3_7) bump x.y.z versions to even y prior to creation of RELEASE_3_7 branch 5cdd6e0 revert commit 63d51b83b60d6656930e0436a42cd606e5ef23b9 63d51b8 mark as unsupported on 32-bit windows; the builders only have 64-bit pandoc 7b7f415 bump x.y.z versions to odd y after creation of RELEASE_3_6
branch
40bc005 (origin/RELEASE_3_6) bump x.y.z versions to even y prior to creation of RELEASE_3_6 branch b471035 bump x.y.z versions to odd y after creation of 3_5 branch e296cfc bump x.y.z versions to even y prior to creation of 3_5 branch 927028f Adding AnnotationFilter, NADfinder, GenomicDataCommons, RIVER, BioMedR, banocc Beginning of the extended log of the commits Tanias-MacBook-Air:banocc georgeweingart$ git log commit 9c411f9d62abf39cfc1a32cd888a412577463b5c (HEAD -> master) Author: George Weingart <george.weingart at gmail.com> Date: Wed Oct 17 18:42:24 2018 -0700 Modified DESCRIPTION to update contacts and added parms to enable correct compile using C++11 commit 756f0130599144e9ec90e61e84f90a9cec307a94 (origin/master,
origin/HEAD)
Author: LiNk-NY <mramos09 at gmail.com> Date: Tue Aug 28 18:51:28 2018 -0400 replace BiocInstaller biocLite mentions with BiocManager commit ef9422abd0d4e323268c9d807e0a094c9dd07dd6 Author: vobencha <valerie.obenchain at roswellpark.org> Date: Mon Apr 30 10:41:43 2018 -0400 bump x.y.z versions to odd y after creation of RELEASE_3_7 branch commit d937c6d2f55d92fd3fbcfa1226c65c260cd47387 (origin/RELEASE_3_7) Author: vobencha <valerie.obenchain at roswellpark.org> Date: Mon Apr 30 10:35:46 2018 -0400 bump x.y.z versions to even y prior to creation of RELEASE_3_7 branch On Wed, Oct 17, 2018 at 12:21 PM Obenchain, Valerie < Valerie.Obenchain at roswellpark.org> wrote:
Hi George, Thanks for letting us know - you should now have access. Valerie On 10/17/18 10:50 AM, George Weingart wrote: Hello, The package banocc has a build error - I was given the task to fix
it and
update the "Maintainer" information to include me and the head of
our Lab,
Prof. Curtis Huttenhower. The package was developed originally by Emma Schwager who has left
our Lab.
I cloned the package, made the necessary changes, ran a successful
BUILD ,
CHECK, BiocCheck and committed the changes and am ready to push the changes, but I am getting a "permission denied" message - and
indeed, I
see in my profile I can update only ccrepe.
I need update access against 'banocc"
Thanks!
George Weingart PhD
Huttenhower Lab
Harvard School of Public Health
[[alternative HTML version deleted]]
_______________________________________________
Bioc-devel at r-project.org mailing listhttps:// stat.ethz.ch/mailman/listinfo/bioc-devel
This email message may contain legally privileged and/or confidential information. If you are not the intended recipient(s), or the
employee or
agent responsible for the delivery of this message to the intended recipient(s), you are hereby notified that any disclosure, copying, distribution, or use of this email message is prohibited. If you have received this message in error, please notify the sender immediately
by
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[[alternative HTML version deleted]]
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This email message may contain legally privileged and/or confidential
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This email message may contain legally privileged and/or confidential information. If you are not the intended recipient(s), or the employee or agent responsible for the delivery of this message to the intended recipient(s), you are hereby notified that any disclosure, copying, distribution, or use of this email message is prohibited. If you have received this message in error, please notify the sender immediately by e-mail and delete this email message from your computer. Thank you.
Good day, The warning message is caused by a documentation linking inconsistency in R running on different operating systems. It may be avoided, but it's not essential. Perhaps documentation linking will be soon be consistent between operating systems. -------------------------------------- Dario Strbenac University of Sydney Camperdown NSW 2050 Australia
9 days later
Could I trouble you to look at banocc 1.5.2 that I pushed: it has a warning- Is that ok or can we leave it like that to be released? On Fri, Oct 19, 2018 at 4:07 PM George Weingart <george.weingart at gmail.com> wrote:
Could I trouble you to look at banocc 1.5.2 that I pushed: it has a warning- Is that ok or can we leave it like that to be released? On Thu, Oct 18, 2018 at 7:21 AM Turaga, Nitesh < Nitesh.Turaga at roswellpark.org> wrote:
After a push is made it can take up to 48 hours for it to appear on the build report and landing pages - i.e. we do one pull, build, check, propagate in 24 hours - so if your commit was after the pull for the day it wont be until the following day
On Oct 18, 2018, at 10:03 AM, George Weingart <
george.weingart at gmail.com> wrote:
Hello, Seems I have been able to push successfully but I do not see the build
report - Did I do something wrong or am I alooking at the wrong place?
See enclosed screen print Thanks for your help ! Tanias-MacBook-Air:banocc georgeweingart$ git push origin master Counting objects: 8, done. Delta compression using up to 4 threads. Compressing objects: 100% (8/8), done. Writing objects: 100% (8/8), 1.02 KiB | 1.02 MiB/s, done. Total 8 (delta 6), reused 0 (delta 0) To git.bioconductor.org:packages/banocc 756f013..9aee576 master -> master On Thu, Oct 18, 2018 at 5:16 AM Turaga, Nitesh <
Nitesh.Turaga at roswellpark.org> wrote:
origin git at git.bioconductor.org:packages/myPackage.git (fetch) origin git at git.bioconductor.org:packages/myPackage.git (push)
Typo in there, its ?..org:packages/.."
On Oct 17, 2018, at 10:47 PM, Turaga, Nitesh
<Nitesh.Turaga at RoswellPark.org> wrote:
Your remotes should look like this,
origin git at git.bioconductor.org/packages/myPackage.git (fetch)
origin git at git.bioconductor.org/packages/myPackage.git (push)
Access is through SSH protocol, not HTTPS.
? SSH (developer) read / write access: git at git.bioconductor.org
? HTTPS (public) read only access: https://git.bioconductor.org
Please check http://bioconductor.org/developers/how-to/git/.
Also, http://bioconductor.org/developers/how-to/git/faq/ (#13).
Best,
Nitesh
On Oct 17, 2018, at 9:57 PM, George Weingart <
george.weingart at gmail.com> wrote:
Hi, This is a follow up to Valerie?s response in regards to the
permission to
update ?banocc? I am still getting an error message when I am trying to push: Tanias-MacBook-Air:banocc georgeweingart$ git push origin master fatal: remote error: FATAL: W any packages/banocc nobody DENIED by
fallthru
(or you mis-spelled the reponame) Am I doing something wrong or am I still not permitted to update the repository ? Thanks! George Weingart PhD Huttenhower Lab Harvard School of Public Health DETAILS List of remotes Tanias-MacBook-Air:banocc georgeweingart$ git remote -v origin https://git.bioconductor.org/packages/banocc (fetch) origin https://git.bioconductor.org/packages/banocc (push) Log of the commits Tanias-MacBook-Air:banocc georgeweingart$ git log --oneline 9c411f9 (HEAD -> master) Modified DESCRIPTION to update contacts and
added
parms to enable correct compile using C++11 756f013 (origin/master, origin/HEAD) replace BiocInstaller biocLite mentions with BiocManager ef9422a bump x.y.z versions to odd y after creation of RELEASE_3_7
branch
d937c6d (origin/RELEASE_3_7) bump x.y.z versions to even y prior to creation of RELEASE_3_7 branch 5cdd6e0 revert commit 63d51b83b60d6656930e0436a42cd606e5ef23b9 63d51b8 mark as unsupported on 32-bit windows; the builders only have 64-bit pandoc 7b7f415 bump x.y.z versions to odd y after creation of RELEASE_3_6
branch
40bc005 (origin/RELEASE_3_6) bump x.y.z versions to even y prior to creation of RELEASE_3_6 branch b471035 bump x.y.z versions to odd y after creation of 3_5 branch e296cfc bump x.y.z versions to even y prior to creation of 3_5 branch 927028f Adding AnnotationFilter, NADfinder, GenomicDataCommons,
RIVER,
BioMedR, banocc Beginning of the extended log of the commits Tanias-MacBook-Air:banocc georgeweingart$ git log commit 9c411f9d62abf39cfc1a32cd888a412577463b5c (HEAD -> master) Author: George Weingart <george.weingart at gmail.com> Date: Wed Oct 17 18:42:24 2018 -0700 Modified DESCRIPTION to update contacts and added parms to enable correct compile using C++11 commit 756f0130599144e9ec90e61e84f90a9cec307a94 (origin/master,
origin/HEAD)
Author: LiNk-NY <mramos09 at gmail.com> Date: Tue Aug 28 18:51:28 2018 -0400 replace BiocInstaller biocLite mentions with BiocManager commit ef9422abd0d4e323268c9d807e0a094c9dd07dd6 Author: vobencha <valerie.obenchain at roswellpark.org> Date: Mon Apr 30 10:41:43 2018 -0400 bump x.y.z versions to odd y after creation of RELEASE_3_7 branch commit d937c6d2f55d92fd3fbcfa1226c65c260cd47387 (origin/RELEASE_3_7) Author: vobencha <valerie.obenchain at roswellpark.org> Date: Mon Apr 30 10:35:46 2018 -0400 bump x.y.z versions to even y prior to creation of RELEASE_3_7
branch
On Wed, Oct 17, 2018 at 12:21 PM Obenchain, Valerie < Valerie.Obenchain at roswellpark.org> wrote:
Hi George, Thanks for letting us know - you should now have access. Valerie On 10/17/18 10:50 AM, George Weingart wrote: Hello, The package banocc has a build error - I was given the task to fix
it and
update the "Maintainer" information to include me and the head of
our Lab,
Prof. Curtis Huttenhower. The package was developed originally by Emma Schwager who has left
our Lab.
I cloned the package, made the necessary changes, ran a successful
BUILD ,
CHECK, BiocCheck and committed the changes and am ready to push the changes, but I am getting a "permission denied" message - and
indeed, I
see in my profile I can update only ccrepe.
I need update access against 'banocc"
Thanks!
George Weingart PhD
Huttenhower Lab
Harvard School of Public Health
[[alternative HTML version deleted]]
_______________________________________________
Bioc-devel at r-project.org mailing listhttps:// stat.ethz.ch/mailman/listinfo/bioc-devel
This email message may contain legally privileged and/or
confidential
information. If you are not the intended recipient(s), or the
employee or
agent responsible for the delivery of this message to the intended recipient(s), you are hereby notified that any disclosure, copying, distribution, or use of this email message is prohibited. If you
have
received this message in error, please notify the sender
immediately by
e-mail and delete this email message from your computer. Thank you.
[[alternative HTML version deleted]]
_______________________________________________ Bioc-devel at r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
This email message may contain legally privileged and/or confidential
information. If you are not the intended recipient(s), or the employee or agent responsible for the delivery of this message to the intended recipient(s), you are hereby notified that any disclosure, copying, distribution, or use of this email message is prohibited. If you have received this message in error, please notify the sender immediately by e-mail and delete this email message from your computer. Thank you.
_______________________________________________ Bioc-devel at r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
This email message may contain legally privileged and/or confidential
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This email message may contain legally privileged and/or confidential information. If you are not the intended recipient(s), or the employee or agent responsible for the delivery of this message to the intended recipient(s), you are hereby notified that any disclosure, copying, distribution, or use of this email message is prohibited. If you have received this message in error, please notify the sender immediately by e-mail and delete this email message from your computer. Thank you.
The last push we had on the git server location was Oct 17th.
commit 9aee5761aaa97a063882a85295747640ec405dfb
Author: George Weingart <george.weingart at gmail.com>
Date: Wed Oct 17 21:00:43 2018 -0700
Updated the version number
We have not received any valid push after this date and this is Version: 1.5.2 as per the DESCRIPTION. The package does not have a WARNING it has an ERROR but only in windows
http://bioconductor.org/checkResults/devel/bioc-LATEST/banocc/
Your package will still be included in the release and we encourage you to look into this ERROR when you get a chance as having the package ERROR on windows will make in unavailable on this platform and lose a lot of potential users. Let us know if you are having any troubles with the ERROR by starting a post at bioc-devel at r-project.org
Lori Shepherd
Bioconductor Core Team
Roswell Park Cancer Institute
Department of Biostatistics & Bioinformatics
Elm & Carlton Streets
Buffalo, New York 14263
From: Bioc-devel <bioc-devel-bounces at r-project.org> on behalf of George Weingart <george.weingart at gmail.com>
Sent: Tuesday, October 30, 2018 1:27:10 AM
To: Turaga, Nitesh
Cc: Bioc-devel; Huttenhower, Curtis
Subject: Re: [Bioc-devel] Need update access agaisnt package 'banocc'
Sent: Tuesday, October 30, 2018 1:27:10 AM
To: Turaga, Nitesh
Cc: Bioc-devel; Huttenhower, Curtis
Subject: Re: [Bioc-devel] Need update access agaisnt package 'banocc'
Could I trouble you to look at banocc 1.5.2 that I pushed: it has a warning- Is that ok or can we leave it like that to be released? On Fri, Oct 19, 2018 at 4:07 PM George Weingart <george.weingart at gmail.com> wrote: > Could I trouble you to look at banocc 1.5.2 that I pushed: it has a > warning- > Is that ok or can we leave it like that to be released? > > On Thu, Oct 18, 2018 at 7:21 AM Turaga, Nitesh < > Nitesh.Turaga at roswellpark.org> wrote: > >> After a push is made it can take up to 48 hours for it to appear on the >> build report and landing pages - i.e. we do one pull, build, check, >> propagate in 24 hours - so if your commit was after the pull for the day it >> wont be until the following day >> >> >> >> > On Oct 18, 2018, at 10:03 AM, George Weingart < >> george.weingart at gmail.com> wrote: >> > >> > Hello, >> > >> > Seems I have been able to push successfully but I do not see the build >> report - Did I do something wrong or am I alooking at the wrong place? >> > See enclosed screen print >> > >> > Thanks for your help ! >> > >> > Tanias-MacBook-Air:banocc georgeweingart$ git push origin master >> > Counting objects: 8, done. >> > Delta compression using up to 4 threads. >> > Compressing objects: 100% (8/8), done. >> > Writing objects: 100% (8/8), 1.02 KiB | 1.02 MiB/s, done. >> > Total 8 (delta 6), reused 0 (delta 0) >> > To git.bioconductor.org:packages/banocc >> > 756f013..9aee576 master -> master >> > >> > >> > On Thu, Oct 18, 2018 at 5:16 AM Turaga, Nitesh < >> Nitesh.Turaga at roswellpark.org> wrote: >> > > origin git at git.bioconductor.org:packages/myPackage.git (fetch) >> > > origin git at git.bioconductor.org:packages/myPackage.git (push) >> > >> > >> > >> > Typo in there, its ?..org:packages/.." >> > >> > > On Oct 17, 2018, at 10:47 PM, Turaga, Nitesh >> <Nitesh.Turaga at RoswellPark.org> wrote: >> > > >> > > Your remotes should look like this, >> > > >> > > origin git at git.bioconductor.org/packages/myPackage.git (fetch) >> > > origin git at git.bioconductor.org/packages/myPackage.git (push) >> > > >> > > Access is through SSH protocol, not HTTPS. >> > > >> > > ? SSH (developer) read / write access: git at git.bioconductor.org >> > > ? HTTPS (public) read only access: https://git.bioconductor.org >> > > >> > > >> > > Please check http://bioconductor.org/developers/how-to/git/. >> > > >> > > Also, http://bioconductor.org/developers/how-to/git/faq/ (#13). >> > > >> > > Best, >> > > >> > > Nitesh >> > > >> > > >> > >> On Oct 17, 2018, at 9:57 PM, George Weingart < >> george.weingart at gmail.com> wrote: >> > >> >> > >> Hi, >> > >> >> > >> This is a follow up to Valerie?s response in regards to the >> permission to >> > >> update ?banocc? >> > >> >> > >> I am still getting an error message when I am trying to push: >> > >> >> > >> >> > >> Tanias-MacBook-Air:banocc georgeweingart$ git push origin master >> > >> >> > >> fatal: remote error: FATAL: W any packages/banocc nobody DENIED by >> fallthru >> > >> >> > >> (or you mis-spelled the reponame) >> > >> >> > >> >> > >> Am I doing something wrong or am I still not permitted to update the >> > >> repository ? >> > >> >> > >> Thanks! >> > >> >> > >> George Weingart PhD >> > >> >> > >> Huttenhower Lab >> > >> >> > >> Harvard School of Public Health >> > >> >> > >> >> > >> DETAILS >> > >> >> > >> List of remotes >> > >> >> > >> Tanias-MacBook-Air:banocc georgeweingart$ git remote -v >> > >> >> > >> origin https://git.bioconductor.org/packages/banocc (fetch) >> > >> >> > >> origin https://git.bioconductor.org/packages/banocc (push) >> > >> >> > >> Log of the commits >> > >> >> > >> Tanias-MacBook-Air:banocc georgeweingart$ git log --oneline >> > >> >> > >> 9c411f9 (HEAD -> master) Modified DESCRIPTION to update contacts and >> added >> > >> parms to enable correct compile using C++11 >> > >> >> > >> 756f013 (origin/master, origin/HEAD) replace BiocInstaller biocLite >> > >> mentions with BiocManager >> > >> >> > >> ef9422a bump x.y.z versions to odd y after creation of RELEASE_3_7 >> branch >> > >> >> > >> d937c6d (origin/RELEASE_3_7) bump x.y.z versions to even y prior to >> > >> creation of RELEASE_3_7 branch >> > >> >> > >> 5cdd6e0 revert commit 63d51b83b60d6656930e0436a42cd606e5ef23b9 >> > >> >> > >> 63d51b8 mark as unsupported on 32-bit windows; the builders only have >> > >> 64-bit pandoc >> > >> >> > >> 7b7f415 bump x.y.z versions to odd y after creation of RELEASE_3_6 >> branch >> > >> >> > >> 40bc005 (origin/RELEASE_3_6) bump x.y.z versions to even y prior to >> > >> creation of RELEASE_3_6 branch >> > >> >> > >> b471035 bump x.y.z versions to odd y after creation of 3_5 branch >> > >> >> > >> e296cfc bump x.y.z versions to even y prior to creation of 3_5 branch >> > >> >> > >> 927028f Adding AnnotationFilter, NADfinder, GenomicDataCommons, >> RIVER, >> > >> BioMedR, banocc >> > >> >> > >> >> > >> >> > >> >> > >> Beginning of the extended log of the commits >> > >> >> > >> Tanias-MacBook-Air:banocc georgeweingart$ git log >> > >> >> > >> commit 9c411f9d62abf39cfc1a32cd888a412577463b5c (HEAD -> master) >> > >> >> > >> Author: George Weingart <george.weingart at gmail.com> >> > >> >> > >> Date: Wed Oct 17 18:42:24 2018 -0700 >> > >> >> > >> Modified DESCRIPTION to update contacts and added parms to enable >> > >> correct compile using C++11 >> > >> >> > >> commit 756f0130599144e9ec90e61e84f90a9cec307a94 (origin/master, >> origin/HEAD) >> > >> >> > >> Author: LiNk-NY <mramos09 at gmail.com> >> > >> >> > >> Date: Tue Aug 28 18:51:28 2018 -0400 >> > >> >> > >> replace BiocInstaller biocLite mentions with BiocManager >> > >> >> > >> commit ef9422abd0d4e323268c9d807e0a094c9dd07dd6 >> > >> >> > >> Author: vobencha <valerie.obenchain at roswellpark.org> >> > >> >> > >> Date: Mon Apr 30 10:41:43 2018 -0400 >> > >> >> > >> bump x.y.z versions to odd y after creation of RELEASE_3_7 branch >> > >> >> > >> commit d937c6d2f55d92fd3fbcfa1226c65c260cd47387 (origin/RELEASE_3_7) >> > >> >> > >> Author: vobencha <valerie.obenchain at roswellpark.org> >> > >> >> > >> Date: Mon Apr 30 10:35:46 2018 -0400 >> > >> >> > >> bump x.y.z versions to even y prior to creation of RELEASE_3_7 >> branch >> > >> >> > >> >> > >> On Wed, Oct 17, 2018 at 12:21 PM Obenchain, Valerie < >> > >> Valerie.Obenchain at roswellpark.org> wrote: >> > >> >> > >>> Hi George, >> > >>> >> > >>> Thanks for letting us know - you should now have access. >> > >>> >> > >>> Valerie >> > >>> >> > >>> >> > >>> On 10/17/18 10:50 AM, George Weingart wrote: >> > >>> >> > >>> Hello, >> > >>> >> > >>> The package banocc has a build error - I was given the task to fix >> it and >> > >>> update the "Maintainer" information to include me and the head of >> our Lab, >> > >>> Prof. Curtis Huttenhower. >> > >>> >> > >>> The package was developed originally by Emma Schwager who has left >> our Lab. >> > >>> >> > >>> I cloned the package, made the necessary changes, ran a successful >> BUILD , >> > >>> CHECK, BiocCheck and committed the changes and am ready to push the >> > >>> changes, but I am getting a "permission denied" message - and >> indeed, I >> > >>> see in my profile I can update only ccrepe. >> > >>> >> > >>> I need update access against 'banocc" >> > >>> >> > >>> Thanks! >> > >>> >> > >>> George Weingart PhD >> > >>> >> > >>> Huttenhower Lab >> > >>> >> > >>> Harvard School of Public Health >> > >>> >> > >>> [[alternative HTML version deleted]] >> > >>> >> > >>> _______________________________________________ >> Bioc-devel at r-project.org mailing listhttps:// >> stat.ethz.ch/mailman/listinfo/bioc-devel >> > >>> >> > >>> >> > >>> >> > >>> This email message may contain legally privileged and/or >> confidential >> > >>> information. 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